<ddi:DDIInstance xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="ddi:instance:3_3 http://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:ddi="ddi:instance:3_3" xmlns:r="ddi:reusable:3_3" xmlns:s="ddi:studyunit:3_3" xmlns:d="ddi:datacollection:3_3" xmlns:a="ddi:archive:3_3" xmlns:c="ddi:conceptualcomponent:3_3" xmlns:cm="ddi:comparative:3_3" xmlns:g="ddi:group:3_3" xmlns:l="ddi:logicalproduct:3_3" xmlns:p="ddi:physicaldataproduct:3_3" xmlns:pi="ddi:physicalinstance:3_3" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:xhtml="http://www.w3.org/1999/xhtml" xmlns:xml="http://www.w3.org/XML/1998/namespace" isMaintainable="true" scopeOfUniqueness="Agency">
  <r:URN>urn:ddi:se.researchdata:2022-252-1:2</r:URN>
  <r:Agency>SND</r:Agency>
  <r:ID>2022-252-1</r:ID>
  <r:Version>2</r:Version>
  <g:ResourcePackage>
    <r:URN>urn:ddi:se.researchdata:2022-252-1.ResourcePackage:2.0</r:URN>
    <r:OtherMaterialScheme>
      <r:URN>urn:ddi:se.researchdata:2022-252-1.OtherMaterialScheme:2.0</r:URN>
    </r:OtherMaterialScheme>
    <a:OrganizationScheme>
      <r:URN>urn:ddi:se.researchdata:2022-252-1.OrganizationScheme-0:2.0</r:URN>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2022-252-1.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Elsa</a:FirstGiven>
            <a:LastFamily>Demes</a:LastFamily>
            <a:FullName>
              <r:String>Elsa Demes</r:String>
            </a:FullName>
          </a:IndividualName>
          <a:ResearcherID>
            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0002-8386-7763</a:ResearcherIdentification>
          </a:ResearcherID>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2022-252-1.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Stéphane</a:FirstGiven>
            <a:LastFamily>Verger</a:LastFamily>
            <a:FullName>
              <r:String>Stéphane Verger</r:String>
            </a:FullName>
          </a:IndividualName>
          <a:ResearcherID>
            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0003-3643-3978</a:ResearcherIdentification>
          </a:ResearcherID>
        </a:IndividualIdentification>
      </a:Individual>
    </a:OrganizationScheme>
  </g:ResourcePackage>
  <s:StudyUnit>
    <r:URN>urn:ddi:se.researchdata:2022-252-1.StudyUnit:2.0</r:URN>
    <r:UserID typeOfUserID="datasetIdentifier">2022-252-1</r:UserID>
    <r:UserID typeOfUserID="principalRegistrationNumber">SLU.genfys.2023.4.4.IÄ-2</r:UserID>
    <r:Citation>
      <r:Title>
        <r:String xml:lang="sv">Datauppsättning från konfokalmikroskopi av växtprover – ”High throughput”-karakterisering av kortikala mikrotubuli-nätverks svar på mekanisk stress.</r:String>
        <r:String xml:lang="en">Dataset of confocal microscopy from plant samples - High-throughput characterization of cortical microtubule arrays response to anisotropic tensile stress</r:String>
      </r:Title>
      <r:Creator>
        <r:CreatorReference>
          <r:URN>urn:ddi:se.researchdata:2022-252-1.Individual-0:2.0</r:URN>
          <r:TypeOfObject>Individual</r:TypeOfObject>
        </r:CreatorReference>
      </r:Creator>
      <r:Publisher>
        <r:PublisherName>
          <r:String xml:lang="sv">Sveriges lantbruksuniversitet</r:String>
          <r:String xml:lang="en">Swedish University of Agricultural Sciences</r:String>
        </r:PublisherName>
      </r:Publisher>
      <r:Publisher>
        <r:PublisherName>
          <r:String xml:lang="sv">Sveriges lantbruksuniversitet</r:String>
          <r:String xml:lang="en">Swedish University of Agricultural Sciences</r:String>
        </r:PublisherName>
      </r:Publisher>
      <r:PublicationDate>
        <r:SimpleDate>2023-05-10</r:SimpleDate>
      </r:PublicationDate>
      <r:InternationalIdentifier>
        <r:IdentifierContent>10.5878/17te-jg54</r:IdentifierContent>
        <r:ManagingAgency controlledVocabularyAgencyName="DOI">DOI</r:ManagingAgency>
      </r:InternationalIdentifier>
    </r:Citation>
    <r:Abstract>
      <r:Content xml:lang="sv">Datamängden innehåller Tiff Z-stackar från transgena ljusodlade hypokotyler och hjärtblad från Arabidopsis thaliana uttryckande kortikala mikrotubuli (CMT)-reporterlinjer antingen med få eller inga dödade celler från ett tidsserieexperiment. Denna datauppsättning analyserades med ett nytt halvautomatiserat arbetsflöde för bildanalys som vi har utvecklat för att kvantifiera CMT-omorganisation i enskilda celler efter en ablation. (https://github.com/VergerLab/MT_Angle2Ablation_Workflow).

Datamängden i zip-filen analyserades med hjälp av skripten på GitHub (https://github.com/VergerLab/MT_Angle2Ablation_Workflow). Ett steg för steg beskriver och förklarar alla skript för bildanalysproceduren. De mellanliggande data som genereras av analysmetoden kan hittas på zenodo (https://doi.org/10.5281/zenodo.7436075).

Dokumentationsfilen Example_2D_Image.tif ger en visuell representation från en typisk z-stack.</r:Content>
      <r:Content xml:lang="en">The data set contains Tiff Z-stacks from light-grown hypocotyls and cotyledons of cortical microtubule (CMT) reporter lines either with few or no ablated cells from a time series experiment. This data set was analyzed with a new semi-automated image analysis workflow we have developed to quantify CMTs reorganization in individual cells following an ablation (https://github.com/VergerLab/MT_Angle2Ablation_Workflow).

The dataset in the zip file was analyzed using the scripts on GitHub (https://github.com/VergerLab/MT_Angle2Ablation_Workflow). A step by step describes and explains all the scripts of the image analysis procedure. The intermediate data generated by the analysis method can be found on zenodo (https://doi.org/10.5281/zenodo.7436075). 

The documentation file Example_2D_Image.tif gives a visual representation from a typical z-stack.</r:Content>
    </r:Abstract>
    <r:Coverage>
      <r:TopicalCoverage>
        <r:URN>urn:ddi:se.researchdata:2022-252-1.TopicalCoverage:2.0</r:URN>
        <r:Subject xml:lang="en" controlledVocabularyID="10604" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Cell Biology</r:Subject>
        <r:Subject xml:lang="sv" controlledVocabularyID="10604" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Cellbiologi</r:Subject>
        <r:Subject xml:lang="en" controlledVocabularyID="10614" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Developmental Biology</r:Subject>
        <r:Subject xml:lang="sv" controlledVocabularyID="10614" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Utvecklingsbiologi</r:Subject>
        <r:Subject xml:lang="en" controlledVocabularyID="40401" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Plant Biotechnology</r:Subject>
        <r:Subject xml:lang="sv" controlledVocabularyID="40401" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Växtbioteknologi</r:Subject>
      </r:TopicalCoverage>
      <r:SpatialCoverage />
    </r:Coverage>
    <d:DataCollection>
      <r:URN>urn:ddi:se.researchdata:2022-252-1.DataCollection:2.0</r:URN>
      <d:CollectionEvent>
        <r:URN>urn:ddi:se.researchdata:2022-252-1.CollectionEvent:2.0</r:URN>
        <d:DataCollectionDate />
        <d:ModeOfCollection>
          <r:URN>urn:ddi:se.researchdata:2022-252-1.CollectionEvent-0-ModeOfCollectionType:2.0</r:URN>
          <d:TypeOfModeOfCollection>Recording</d:TypeOfModeOfCollection>
          <r:Description>
            <r:Content xml:lang="en">Recording</r:Content>
            <r:Content xml:lang="sv">Inspelning</r:Content>
          </r:Description>
        </d:ModeOfCollection>
      </d:CollectionEvent>
    </d:DataCollection>
    <a:Archive>
      <r:URN>urn:ddi:se.researchdata:2022-252-1.Archive:2.0</r:URN>
      <a:ArchiveSpecific>
        <a:Item>
          <a:Access>
            <r:URN>urn:ddi:se.researchdata:2022-252-1.Archive-ArchiveSpecificType-AccessType:2.0</r:URN>
            <a:TypeOfAccess controlledVocabularyName="info:eu-repo-Access-Terms vocabulary">openAccess</a:TypeOfAccess>
          </a:Access>
          <a:DataFileQuantity>8</a:DataFileQuantity>
        </a:Item>
      </a:ArchiveSpecific>
    </a:Archive>
  </s:StudyUnit>
</ddi:DDIInstance>