<ddi:DDIInstance xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="ddi:instance:3_3 http://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:ddi="ddi:instance:3_3" xmlns:r="ddi:reusable:3_3" xmlns:s="ddi:studyunit:3_3" xmlns:d="ddi:datacollection:3_3" xmlns:a="ddi:archive:3_3" xmlns:c="ddi:conceptualcomponent:3_3" xmlns:cm="ddi:comparative:3_3" xmlns:g="ddi:group:3_3" xmlns:l="ddi:logicalproduct:3_3" xmlns:p="ddi:physicaldataproduct:3_3" xmlns:pi="ddi:physicalinstance:3_3" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:xhtml="http://www.w3.org/1999/xhtml" xmlns:xml="http://www.w3.org/XML/1998/namespace" isMaintainable="true" scopeOfUniqueness="Agency">
  <r:URN>urn:ddi:se.researchdata:2023-83-1:1</r:URN>
  <r:Agency>SND</r:Agency>
  <r:ID>2023-83-1</r:ID>
  <r:Version>1</r:Version>
  <g:ResourcePackage>
    <r:URN>urn:ddi:se.researchdata:2023-83-1.ResourcePackage:2.0</r:URN>
    <r:OtherMaterialScheme>
      <r:URN>urn:ddi:se.researchdata:2023-83-1.OtherMaterialScheme:2.0</r:URN>
    </r:OtherMaterialScheme>
    <a:OrganizationScheme>
      <r:URN>urn:ddi:se.researchdata:2023-83-1.OrganizationScheme-0:2.0</r:URN>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2023-83-1.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Ecology, Swedish University of Agricultural Sciences</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Alistair</a:FirstGiven>
            <a:LastFamily>Auffret</a:LastFamily>
            <a:FullName>
              <r:String>Alistair Auffret</r:String>
            </a:FullName>
          </a:IndividualName>
          <a:ResearcherID>
            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0002-4190-4423</a:ResearcherIdentification>
          </a:ResearcherID>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2023-83-1.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Swedish Species Information Centre, Swedish University of Agricultural Sciences</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Hedvig</a:FirstGiven>
            <a:LastFamily>Nenzén</a:LastFamily>
            <a:FullName>
              <r:String>Hedvig Nenzén</r:String>
            </a:FullName>
          </a:IndividualName>
          <a:ResearcherID>
            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0002-0189-4283</a:ResearcherIdentification>
          </a:ResearcherID>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2023-83-1.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Ecology, Swedish University of Agricultural Sciences</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Ester</a:FirstGiven>
            <a:LastFamily>Polaina</a:LastFamily>
            <a:FullName>
              <r:String>Ester Polaina</r:String>
            </a:FullName>
          </a:IndividualName>
          <a:ResearcherID>
            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0002-5064-5881</a:ResearcherIdentification>
          </a:ResearcherID>
        </a:IndividualIdentification>
      </a:Individual>
    </a:OrganizationScheme>
  </g:ResourcePackage>
  <s:StudyUnit>
    <r:URN>urn:ddi:se.researchdata:2023-83-1.StudyUnit:2.0</r:URN>
    <r:UserID typeOfUserID="datasetIdentifier">2023-83-1</r:UserID>
    <r:UserID typeOfUserID="principalRegistrationNumber">SLU.ekol.2023.4.4.IÄ-12</r:UserID>
    <r:Citation>
      <r:Title>
        <r:String xml:lang="sv">Data for: Underprediction of extirpation and colonisation following climate and land-use change using species distribution models</r:String>
        <r:String xml:lang="en">Data for: Underprediction of extirpation and colonisation following climate and land-use change using species distribution models</r:String>
      </r:Title>
      <r:Creator>
        <r:CreatorReference>
          <r:URN>urn:ddi:se.researchdata:2023-83-1.Individual-0:2.0</r:URN>
          <r:TypeOfObject>Individual</r:TypeOfObject>
        </r:CreatorReference>
      </r:Creator>
      <r:Publisher>
        <r:PublisherName>
          <r:String xml:lang="sv">Sveriges lantbruksuniversitet</r:String>
          <r:String xml:lang="en">Swedish University of Agricultural Sciences</r:String>
        </r:PublisherName>
      </r:Publisher>
      <r:Publisher>
        <r:PublisherName>
          <r:String xml:lang="sv">Sveriges lantbruksuniversitet</r:String>
          <r:String xml:lang="en">Swedish University of Agricultural Sciences</r:String>
        </r:PublisherName>
      </r:Publisher>
      <r:PublicationDate>
        <r:SimpleDate>2024-03-28</r:SimpleDate>
      </r:PublicationDate>
      <r:InternationalIdentifier>
        <r:IdentifierContent>10.5878/xt40-pv58</r:IdentifierContent>
        <r:ManagingAgency controlledVocabularyAgencyName="DOI">DOI</r:ManagingAgency>
      </r:InternationalIdentifier>
    </r:Citation>
    <r:Abstract>
      <r:Content xml:lang="sv">Associerade data för en publicerad artikel. Data avser hur modellerade och observerade kolonisationer, lokalt utdöende och fortlevande av 84 kärlväxtarter mellan 1910-1945 och 1990-2020 är relaterade förändringar i markanvändning och klimat. Se den engelska beskrivningen för mer information.

Se README-filen för information angående filerna och dess variabler.

SpeciesData.csv: 84 rader × 21 kolumner
GridSquareData.csv: 1038 rader × 19 kolumner

Utdata (AnalysisCode_log.txt och pdf:er) kan skapas genom att köra :
Rscript AnalysisCode.R &gt; AnalysisCode_log.txt

För sessionsinformation vid körning, se engelsk beskrivning och slutet på loggfilen.</r:Content>
      <r:Content xml:lang="en">Associated dataset for published paper. The dataset contains data used for evaluating the performance of species distribution models in relation to species’ climate associations, and experienced changes in climate and land use. First, ensemble species distribution models were built for 84 vascular plant species in three provinces in Sweden (Bohuslän, Öland and Uppland) using historical climate (1961-1970), land use (1940s-1960s) and species observations (approx. 1910-1945) in 1055 5 × 5 km grid cells. Then these models were evaluated using internal cross-validation (predicting presences in the same time period in a subset of withheld grid cells) and independent temporal validation, where models were re-parameterised using modern climate (2001-2010) and land-use data (2018), and predicted presences compared to modern observed occurrences (1990-2020). This dataset contains the proportion of observed colonisations, persistences and extirpations (local extinctions) for each species, together with species’ climate and habitat associations. It also contains the proportion of observed colonisations, persistences and extirpations for all species in each grid cell, together with the observed changes in climate (mean annual temperature) and land use (grassland abandonment).

Please see the README file for information regarding the data files and the variables within.

SpeciesData.csv: 84 rows × 24 columns
GridSquareData.csv: 1038 rows × 23 columns

Output (AnalysisCode_log.txt and pdf plots) kan be generated by running:
Rscript AnalysisCode.R &gt; AnalysisCode_log.txt

Session info (also included in the log file):
R version 4.3.1 (2023-06-16)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Gentoo Linux

Matrix products: default
BLAS:   /usr/lib64/libblas.so.3.11.0 
LAPACK: /usr/lib64/R/lib/libRlapack.so;  LAPACK version 3.11.0

locale:
 [1] LC_CTYPE=C.UTF8       LC_NUMERIC=C          LC_TIME=C.UTF8       
 [4] LC_COLLATE=C.UTF8     LC_MONETARY=C.UTF8    LC_MESSAGES=C.UTF8   
 [7] LC_PAPER=C.UTF8       LC_NAME=C             LC_ADDRESS=C         
[10] LC_TELEPHONE=C        LC_MEASUREMENT=C.UTF8 LC_IDENTIFICATION=C  

time zone: Europe/Stockholm
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] visreg_2.7.0

loaded via a namespace (and not attached):
[1] compiler_4.3.1 grid_4.3.1     lattice_0.21-8</r:Content>
    </r:Abstract>
    <r:Coverage>
      <r:TopicalCoverage>
        <r:URN>urn:ddi:se.researchdata:2023-83-1.TopicalCoverage:2.0</r:URN>
        <r:Subject xml:lang="en" controlledVocabularyID="10611" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Ecology</r:Subject>
        <r:Subject xml:lang="sv" controlledVocabularyID="10611" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Ekologi</r:Subject>
        <r:Subject xml:lang="en" controlledVocabularyID="biota" controlledVocabularyName="INSPIRE topic categories">Biota</r:Subject>
        <r:Subject xml:lang="sv" controlledVocabularyID="biota" controlledVocabularyName="INSPIRE topic categories">Biologi och ekologi</r:Subject>
        <r:Subject xml:lang="en" controlledVocabularyID="environment" controlledVocabularyName="INSPIRE topic categories">Environment</r:Subject>
        <r:Subject xml:lang="sv" controlledVocabularyID="environment" controlledVocabularyName="INSPIRE topic categories">Miljö</r:Subject>
        <r:Keyword xml:lang="en" controlledVocabularyID="8fb66b46-b998-4412-a541-d2acabdf484b" controlledVocabularyName="GCMD">COMMUNITY DYNAMICS</r:Keyword>
        <r:Keyword xml:lang="en" controlledVocabularyID="21672" controlledVocabularyName="EnvThes">ecology</r:Keyword>
        <r:Keyword xml:lang="sv" controlledVocabularyID="21672" controlledVocabularyName="EnvThes">ekologi</r:Keyword>
        <r:Keyword xml:lang="en" controlledVocabularyID="20943" controlledVocabularyName="EnvThes">landscape parameter</r:Keyword>
        <r:Keyword xml:lang="en" controlledVocabularyID="lc" controlledVocabularyName="INSPIRE Spatial Data Themes">Land cover</r:Keyword>
        <r:Keyword xml:lang="sv" controlledVocabularyID="lc" controlledVocabularyName="INSPIRE Spatial Data Themes">Landtäcke</r:Keyword>
        <r:Keyword xml:lang="en" controlledVocabularyID="lu" controlledVocabularyName="INSPIRE Spatial Data Themes">Land use</r:Keyword>
        <r:Keyword xml:lang="sv" controlledVocabularyID="lu" controlledVocabularyName="INSPIRE Spatial Data Themes">Markanvändning</r:Keyword>
        <r:Keyword xml:lang="en" controlledVocabularyID="5000045" controlledVocabularyName="Dyntaxa">Plantae</r:Keyword>
        <r:Keyword xml:lang="sv" controlledVocabularyID="5000045" controlledVocabularyName="Dyntaxa">egentliga växter</r:Keyword>
      </r:TopicalCoverage>
      <r:SpatialCoverage>
        <r:URN>urn:ddi:se.researchdata:2023-83-1.SpatialCoverage:2.0</r:URN>
        <r:Description>
          <r:Content xml:lang="en">The provinces of Bohuslän, Öland and Uppland</r:Content>
        </r:Description>
        <r:CountryCode>SE</r:CountryCode>
      </r:SpatialCoverage>
      <r:TemporalCoverage>
        <r:URN>urn:ddi:se.researchdata:2023-83-1.TemporalCoverage:2.0</r:URN>
        <r:ReferenceDate>
          <r:StartDate>1910</r:StartDate>
          <r:EndDate>2020</r:EndDate>
        </r:ReferenceDate>
      </r:TemporalCoverage>
    </r:Coverage>
    <a:Archive>
      <r:URN>urn:ddi:se.researchdata:2023-83-1.Archive:2.0</r:URN>
      <a:ArchiveSpecific>
        <a:Item>
          <a:Access>
            <r:URN>urn:ddi:se.researchdata:2023-83-1.Archive-ArchiveSpecificType-AccessType:2.0</r:URN>
            <a:TypeOfAccess controlledVocabularyName="info:eu-repo-Access-Terms vocabulary">openAccess</a:TypeOfAccess>
          </a:Access>
          <a:DataFileQuantity>12</a:DataFileQuantity>
        </a:Item>
      </a:ArchiveSpecific>
    </a:Archive>
  </s:StudyUnit>
</ddi:DDIInstance>