Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance
type: Dataset
distribution: Landing page for the dataset
description: We present a comprehensive analysis of stop codon usage in bacteria by analyzing over eight million coding sequences of 4684 bacterial sequences. Using a newly developed program called "stop codon counter," the frequencies of the three classical stop codons TAA, TAG, and TGA were analyzed, and a publicly available stop codon database was built. Datafiles contain: 1) Complete data set of stop codon usage of all analyzed sequences as described in the publication "Comprehensive Analysis of Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance" by Korkmaz et al (2014). 2) The Java program that was used for the analysis of the coding sequences. Execute the file in Program\ProjectStopCodonCounter\dist The dataset was originally published in DiVA and moved to SND in 2024.
description: Se engelsk version av katalogposten för information om data. Datasetet har ursprungligen publicerats i DiVA och flyttades över till SND 2024. @sv
modified: 2025-06-26T09:35:04.991917Z
issued: 2016-12-14T00:00:00Z
publisher: Uppsala University
access rights: PUBLIC
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Gürkan Korkmaz
    type: Agent
    account: 0000-0003-1911-027X
    type: PrivateIndividual(s)
keyword: molecular biology
keyword: molekylärbiologi @sv
keyword: bacteria
keyword: bakterier @sv
keyword: biochemistry
keyword: biokemi @sv
language: ENG

Landing page for the dataset
type: Distribution
title: Landningssida för datasetet @sv
access URL: Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance
availability: stable

Uppsala University
type: Agent
name: Uppsala universitet @sv
type: Academia-ScientificOrganisation
source: https://ror.org/048a87296