<codeBook xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xsi:schemaLocation="ddi:codebook:2_5 http://www.ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd" xmlns="ddi:codebook:2_5">
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    <citation>
      <titlStmt>
        <titl xml:lang="sv">Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance</titl>
        <altTitl>Comprehensive Analysis of Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance</altTitl>
        <parTitl xml:lang="en">Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance</parTitl>
        <IDNo agency="SND">2024-189-1</IDNo>
        <IDNo agency="DOI">https://doi.org/10.57804/83hw-m374</IDNo>
      </titlStmt>
      <prodStmt>
        <producer xml:lang="en" abbr="SND">Swedish National Data Service</producer>
        <producer xml:lang="sv" abbr="SND">Svensk nationell datatjänst</producer>
      </prodStmt>
      <holdings URI="https://doi.org/10.57804/83hw-m374">Landing page</holdings>
    </citation>
  </docDscr>
  <stdyDscr>
    <citation>
      <titlStmt>
        <titl xml:lang="sv">Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance</titl>
        <altTitl>Comprehensive Analysis of Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance</altTitl>
        <parTitl xml:lang="en">Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance</parTitl>
        <IDNo agency="SND">2024-189-1</IDNo>
        <IDNo agency="DOI">https://doi.org/10.57804/83hw-m374</IDNo>
      </titlStmt>
      <rspStmt>
        <AuthEnty xml:lang="en" affiliation="Uppsala University">Korkmaz, Gürkan</AuthEnty>
        <AuthEnty xml:lang="sv" affiliation="Uppsala universitet">Korkmaz, Gürkan</AuthEnty>
      </rspStmt>
      <prodStmt />
      <distStmt>
        <distrbtr xml:lang="en" abbr="SND" URI="https://snd.se">Swedish National Data Service</distrbtr>
        <distrbtr xml:lang="sv" abbr="SND" URI="https://snd.se">Svensk nationell datatjänst</distrbtr>
        <distDate xml:lang="en" date="2016-12-14" />
      </distStmt>
      <verStmt>
        <version elementVersion="1" elementVersionDate="2016-12-14" />
      </verStmt>
      <holdings URI="https://doi.org/10.57804/83hw-m374">Landing page</holdings>
    </citation>
    <stdyInfo>
      <subject>
        <keyword xml:lang="en" vocab="YSO" vocabURI="http://www.yso.fi/onto/yso/p7549">molecular biology</keyword>
        <keyword xml:lang="sv" vocab="YSO" vocabURI="http://www.yso.fi/onto/yso/p7549">molekylärbiologi</keyword>
        <keyword xml:lang="en" vocab="YSO" vocabURI="http://www.yso.fi/onto/yso/p1749">bacteria</keyword>
        <keyword xml:lang="sv" vocab="YSO" vocabURI="http://www.yso.fi/onto/yso/p1749">bakterier</keyword>
        <keyword xml:lang="en" vocab="YSO" vocabURI="http://www.yso.fi/onto/yso/p1375">biochemistry</keyword>
        <keyword xml:lang="sv" vocab="YSO" vocabURI="http://www.yso.fi/onto/yso/p1375">biokemi</keyword>
      </subject>
      <abstract xml:lang="en" contentType="abstract">We present a comprehensive analysis of stop codon usage in bacteria by analyzing over eight million coding sequences of 4684 bacterial sequences. Using a newly developed program called "stop codon counter," the frequencies of the three classical stop codons TAA, TAG, and TGA were analyzed, and a publicly available stop codon database was built.

Datafiles contain:
1) Complete data set of stop codon usage of all analyzed sequences as described in the publication "Comprehensive Analysis of Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance" by Korkmaz et al (2014).

2) The Java program that was used for the analysis of the coding sequences. Execute the file in Program\ProjectStopCodonCounter\dist


The dataset was originally published in DiVA and moved to SND in 2024.</abstract>
      <abstract xml:lang="sv" contentType="abstract">Se engelsk version av katalogposten för information om data.

Datasetet har ursprungligen publicerats i DiVA och flyttades över till SND 2024.</abstract>
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        <restrctn xml:lang="en">Access to data through SND. Data are freely accessible.</restrctn>
        <restrctn xml:lang="sv">Åtkomst till data via SND. Data är fritt tillgängliga.</restrctn>
        <conditions elementVersion="info:eu-repo-Access-Terms vocabulary">openAccess</conditions>
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