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  <r:URN>urn:ddi:se.researchdata:2024-189:1</r:URN>
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  <r:ID>2024-189</r:ID>
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    <r:URN>urn:ddi:se.researchdata:2024-189.ResourcePackage:2.0</r:URN>
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      <r:URN>urn:ddi:se.researchdata:2024-189.OtherMaterialScheme:2.0</r:URN>
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      <r:URN>urn:ddi:se.researchdata:2024-189.OrganizationScheme-0:2.0</r:URN>
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        <r:URN>urn:ddi:se.researchdata:2024-189.Individual-0:2.0</r:URN>
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          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Uppsala University</r:AttributeValue>
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          <a:IndividualName>
            <a:FirstGiven>Gürkan</a:FirstGiven>
            <a:LastFamily>Korkmaz</a:LastFamily>
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              <r:String>Gürkan Korkmaz</r:String>
            </a:FullName>
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            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0003-1911-027X</a:ResearcherIdentification>
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    <r:Citation>
      <r:Title>
        <r:String xml:lang="sv">Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance</r:String>
        <r:String xml:lang="en">Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance</r:String>
      </r:Title>
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        <r:CreatorReference>
          <r:URN>urn:ddi:se.researchdata:2024-189.Individual-0:2.0</r:URN>
          <r:TypeOfObject>Individual</r:TypeOfObject>
        </r:CreatorReference>
      </r:Creator>
      <r:Publisher>
        <r:PublisherName>
          <r:String xml:lang="sv">Uppsala universitet</r:String>
          <r:String xml:lang="en">Uppsala University</r:String>
        </r:PublisherName>
      </r:Publisher>
      <r:Publisher>
        <r:PublisherName>
          <r:String xml:lang="sv">Uppsala universitet</r:String>
          <r:String xml:lang="en">Uppsala University</r:String>
        </r:PublisherName>
      </r:Publisher>
      <r:PublicationDate>
        <r:SimpleDate>2016-12-14</r:SimpleDate>
      </r:PublicationDate>
      <r:InternationalIdentifier>
        <r:IdentifierContent>10.57804/83hw-m374</r:IdentifierContent>
        <r:ManagingAgency controlledVocabularyAgencyName="DOI">DOI</r:ManagingAgency>
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    </r:Citation>
    <r:Abstract>
      <r:Content xml:lang="sv">Se engelsk version av katalogposten för information om data.

Datasetet har ursprungligen publicerats i DiVA och flyttades över till SND 2024.</r:Content>
      <r:Content xml:lang="en">We present a comprehensive analysis of stop codon usage in bacteria by analyzing over eight million coding sequences of 4684 bacterial sequences. Using a newly developed program called "stop codon counter," the frequencies of the three classical stop codons TAA, TAG, and TGA were analyzed, and a publicly available stop codon database was built.

Datafiles contain:
1) Complete data set of stop codon usage of all analyzed sequences as described in the publication "Comprehensive Analysis of Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance" by Korkmaz et al (2014).

2) The Java program that was used for the analysis of the coding sequences. Execute the file in Program\ProjectStopCodonCounter\dist


The dataset was originally published in DiVA and moved to SND in 2024.</r:Content>
    </r:Abstract>
    <r:Coverage>
      <r:TopicalCoverage>
        <r:URN>urn:ddi:se.researchdata:2024-189.TopicalCoverage:2.0</r:URN>
        <r:Subject xml:lang="en" controlledVocabularyID="10616" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Molecular Biology</r:Subject>
        <r:Subject xml:lang="sv" controlledVocabularyID="10616" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Molekylärbiologi</r:Subject>
        <r:Subject xml:lang="en" controlledVocabularyID="10408" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Biochemistry</r:Subject>
        <r:Subject xml:lang="sv" controlledVocabularyID="10408" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Biokemi</r:Subject>
        <r:Keyword xml:lang="en" controlledVocabularyID="p7549" controlledVocabularyName="YSO">molecular biology</r:Keyword>
        <r:Keyword xml:lang="sv" controlledVocabularyID="p7549" controlledVocabularyName="YSO">molekylärbiologi</r:Keyword>
        <r:Keyword xml:lang="en" controlledVocabularyID="p1749" controlledVocabularyName="YSO">bacteria</r:Keyword>
        <r:Keyword xml:lang="sv" controlledVocabularyID="p1749" controlledVocabularyName="YSO">bakterier</r:Keyword>
        <r:Keyword xml:lang="en" controlledVocabularyID="p1375" controlledVocabularyName="YSO">biochemistry</r:Keyword>
        <r:Keyword xml:lang="sv" controlledVocabularyID="p1375" controlledVocabularyName="YSO">biokemi</r:Keyword>
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      <r:URN>urn:ddi:se.researchdata:2024-189.Archive:2.0</r:URN>
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