<ddi:DDIInstance xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="ddi:instance:3_3 http://ddialliance.org/Specification/DDI-Lifecycle/3.3/XMLSchema/instance.xsd" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:ddi="ddi:instance:3_3" xmlns:r="ddi:reusable:3_3" xmlns:s="ddi:studyunit:3_3" xmlns:d="ddi:datacollection:3_3" xmlns:a="ddi:archive:3_3" xmlns:c="ddi:conceptualcomponent:3_3" xmlns:cm="ddi:comparative:3_3" xmlns:g="ddi:group:3_3" xmlns:l="ddi:logicalproduct:3_3" xmlns:p="ddi:physicaldataproduct:3_3" xmlns:pi="ddi:physicalinstance:3_3" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:xhtml="http://www.w3.org/1999/xhtml" xmlns:xml="http://www.w3.org/XML/1998/namespace" isMaintainable="true" scopeOfUniqueness="Agency">
  <r:URN>urn:ddi:se.researchdata:2024-342:1</r:URN>
  <r:Agency>SND</r:Agency>
  <r:ID>2024-342</r:ID>
  <r:Version>1</r:Version>
  <g:ResourcePackage>
    <r:URN>urn:ddi:se.researchdata:2024-342.ResourcePackage:2.0</r:URN>
    <r:OtherMaterialScheme>
      <r:URN>urn:ddi:se.researchdata:2024-342.OtherMaterialScheme:2.0</r:URN>
    </r:OtherMaterialScheme>
    <a:OrganizationScheme>
      <r:URN>urn:ddi:se.researchdata:2024-342.OrganizationScheme-0:2.0</r:URN>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2024-342.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Cell and Molecular Biology, Computational Biology and Bioinformatics / Science for Life Laboratory, SciLifeLab, Uppsala University</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Karolina</a:FirstGiven>
            <a:LastFamily>Smolinska Garbulowska</a:LastFamily>
            <a:FullName>
              <r:String>Karolina Smolinska Garbulowska</r:String>
            </a:FullName>
          </a:IndividualName>
          <a:ResearcherID>
            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0003-0907-5298</a:ResearcherIdentification>
          </a:ResearcherID>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2024-342.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Cell and Molecular Biology, Computational Biology and Bioinformatics, Uppsala University</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Mateusz</a:FirstGiven>
            <a:LastFamily>Garbulowski</a:LastFamily>
            <a:FullName>
              <r:String>Mateusz Garbulowski</r:String>
            </a:FullName>
          </a:IndividualName>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2024-342.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Cell and Molecular Biology, Computational Biology and Bioinformatics, Department of Immunology, Genetics and Pathology / Science for Life Laboratory, SciLifeLab, Uppsala University</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Klev</a:FirstGiven>
            <a:LastFamily>Diamanti</a:LastFamily>
            <a:FullName>
              <r:String>Klev Diamanti</r:String>
            </a:FullName>
          </a:IndividualName>
          <a:ResearcherID>
            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0002-4922-8415</a:ResearcherIdentification>
          </a:ResearcherID>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2024-342.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>The Grenoble Institute of Technology– Phelma</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Xavier</a:FirstGiven>
            <a:LastFamily>Davoy</a:LastFamily>
            <a:FullName>
              <r:String>Xavier Davoy</r:String>
            </a:FullName>
          </a:IndividualName>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2024-342.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Cell and Molecular Biology, Computational Biology and Bioinformatics, Uppsala University</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Stephen Omondi Otieno</a:FirstGiven>
            <a:LastFamily>Anyango</a:LastFamily>
            <a:FullName>
              <r:String>Stephen Omondi Otieno Anyango</r:String>
            </a:FullName>
          </a:IndividualName>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2024-342.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Cell and Molecular Biology, Computational Biology and Bioinformatics, Uppsala University</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Fredrik</a:FirstGiven>
            <a:LastFamily>Barrenäs</a:LastFamily>
            <a:FullName>
              <r:String>Fredrik Barrenäs</r:String>
            </a:FullName>
          </a:IndividualName>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2024-342.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Medical Biochemistry and Microbiology, Department of Cell and Molecular Biology / Cancer Research UK Cambridge Institute, Uppsala University / University of Cambridge</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Susanne</a:FirstGiven>
            <a:LastFamily>Bornelöv</a:LastFamily>
            <a:FullName>
              <r:String>Susanne Bornelöv</r:String>
            </a:FullName>
          </a:IndividualName>
          <a:ResearcherID>
            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0001-9276-9981</a:ResearcherIdentification>
          </a:ResearcherID>
        </a:IndividualIdentification>
      </a:Individual>
      <a:Individual>
        <r:URN>urn:ddi:se.researchdata:2024-342.Individual-0:2.0</r:URN>
        <r:UserAttributePair>
          <r:AttributeKey>affiliation</r:AttributeKey>
          <r:AttributeValue>Department of Cell and Molecular Biology, Computational Biology and Bioinformatics, Uppsala University, Swedish Collegium for Advanced Study (SCAS)</r:AttributeValue>
        </r:UserAttributePair>
        <a:IndividualIdentification>
          <a:IndividualName>
            <a:FirstGiven>Jan</a:FirstGiven>
            <a:LastFamily>Komorowski</a:LastFamily>
            <a:FullName>
              <r:String>Jan Komorowski</r:String>
            </a:FullName>
          </a:IndividualName>
          <a:ResearcherID>
            <a:TypeOfID>ORCID</a:TypeOfID>
            <a:ResearcherIdentification>0000-0002-0766-8789</a:ResearcherIdentification>
          </a:ResearcherID>
        </a:IndividualIdentification>
      </a:Individual>
    </a:OrganizationScheme>
  </g:ResourcePackage>
  <s:StudyUnit>
    <r:URN>urn:ddi:se.researchdata:2024-342.StudyUnit:2.0</r:URN>
    <r:UserID typeOfUserID="datasetIdentifier">2024-342</r:UserID>
    <r:Citation>
      <r:Title>
        <r:String xml:lang="sv">SUPPLEMENTARY MATERIAL: VisuNet: an interactive tool for rule network visualization of rule-based learning models</r:String>
        <r:String xml:lang="en">SUPPLEMENTARY MATERIAL: VisuNet: an interactive tool for rule network visualization of rule-based learning models</r:String>
      </r:Title>
      <r:Creator>
        <r:CreatorReference>
          <r:URN>urn:ddi:se.researchdata:2024-342.Individual-0:2.0</r:URN>
          <r:TypeOfObject>Individual</r:TypeOfObject>
        </r:CreatorReference>
      </r:Creator>
      <r:Publisher>
        <r:PublisherName>
          <r:String xml:lang="sv">Uppsala universitet</r:String>
          <r:String xml:lang="en">Uppsala University</r:String>
        </r:PublisherName>
      </r:Publisher>
      <r:Publisher>
        <r:PublisherName>
          <r:String xml:lang="sv">Uppsala universitet</r:String>
          <r:String xml:lang="en">Uppsala University</r:String>
        </r:PublisherName>
      </r:Publisher>
      <r:PublicationDate>
        <r:SimpleDate>2021-10-11</r:SimpleDate>
      </r:PublicationDate>
      <r:InternationalIdentifier>
        <r:IdentifierContent>10.57804/x4y3-g283</r:IdentifierContent>
        <r:ManagingAgency controlledVocabularyAgencyName="DOI">DOI</r:ManagingAgency>
      </r:InternationalIdentifier>
    </r:Citation>
    <r:Abstract>
      <r:Content xml:lang="sv">The data consists of a pdf file with visualizations and an excel file with following tables:

- Table S1 The overview of applications.

- Table S2 SFARI result for 4 genes overlapped the rule-network of case-control study of autism and the SFARI genes databese.

- Table S3 GO over-representation results for the rule-network of case-control study of autism.

- Table S4 Full list of variables used for the rule-based machine learning schema. The list includesmetabolites and pools of metabolites.

- Table S5 List of rules for the R.ROSETTA model including support, accuracy and BH-corrected p-value for each rule.

Datasetet har ursprungligen publicerats i DiVA och flyttades över till SND 2024.</r:Content>
      <r:Content xml:lang="en">The data consists of a pdf file with visualizations and an excel file with following tables:

- Table S1 The overview of applications.

- Table S2 SFARI result for 4 genes overlapped the rule-network of case-control study of autism and the SFARI genes databese.

- Table S3 GO over-representation results for the rule-network of case-control study of autism.

- Table S4 Full list of variables used for the rule-based machine learning schema. The list includesmetabolites and pools of metabolites.

- Table S5 List of rules for the R.ROSETTA model including support, accuracy and BH-corrected p-value for each rule.

The dataset was originally published in DiVA and moved to SND in 2024.</r:Content>
    </r:Abstract>
    <r:Coverage>
      <r:TopicalCoverage>
        <r:URN>urn:ddi:se.researchdata:2024-342.TopicalCoverage:2.0</r:URN>
        <r:Subject xml:lang="en" controlledVocabularyID="10610" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Bioinformatics and Computational Biology</r:Subject>
        <r:Subject xml:lang="sv" controlledVocabularyID="10610" controlledVocabularyName="Standard för svensk indelning av forskningsämnen 2025">Bioinformatik och beräkningsbiologi</r:Subject>
        <r:Keyword xml:lang="en" controlledVocabularyID="p18941" controlledVocabularyName="YSO">systems biology</r:Keyword>
        <r:Keyword xml:lang="sv" controlledVocabularyID="p18941" controlledVocabularyName="YSO">systembiologi</r:Keyword>
        <r:Keyword xml:lang="en" controlledVocabularyID="p15748" controlledVocabularyName="YSO">bioinformatics</r:Keyword>
        <r:Keyword xml:lang="sv" controlledVocabularyID="p15748" controlledVocabularyName="YSO">bioinformatik</r:Keyword>
      </r:TopicalCoverage>
      <r:SpatialCoverage />
    </r:Coverage>
    <a:Archive>
      <r:URN>urn:ddi:se.researchdata:2024-342.Archive:2.0</r:URN>
      <a:ArchiveSpecific>
        <a:Item>
          <a:Access>
            <r:URN>urn:ddi:se.researchdata:2024-342.Archive-ArchiveSpecificType-AccessType:2.0</r:URN>
            <a:TypeOfAccess controlledVocabularyName="info:eu-repo-Access-Terms vocabulary">openAccess</a:TypeOfAccess>
          </a:Access>
          <a:DataFileQuantity>2</a:DataFileQuantity>
        </a:Item>
      </a:ArchiveSpecific>
    </a:Archive>
  </s:StudyUnit>
</ddi:DDIInstance>