Data for: "Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales" (Hallgren et al., 2025)
type: Dataset
distribution: Landing page for the dataset
title: Data för: "Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales" (Hallgren et al., 2025) @sv
description: Additional data for the article "Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales" (Hallgren et al., 2025). The data includes the following: - Sequence alignment files and tree files for all species phylogenies and gene phylogenies of the article. - Genome annotation data files for all genomes of the "core" and "extended" datasets of the article. Genome annotations have been generated as outlined in the article using the following tools and methods: DIAMOND blastp, eggNOG-mapper (emapper), GhostKOALA, InterProScan, and the reciprocal best blast hit algorithm (RBH). Datasets have been compressed into a .zip archive that contains the following folders: CORE-dataset_Gene_Annotations/ CORE-dataset_Gene_Phylogenies/ CORE-dataset_Species_Phylogenies/ EXTENDED-dataset_Gene_Annotations/ EXTENDED-dataset_Species_Phylogenies/ Some of these folders include files that in turn have been packaged into .tar.gz archives, which can be unpacked using the "tar" command in the Linux, macOS, or Windows (Windows 10 or later) command line. Description of datasets: 1. CORE-dataset_Gene_Annotations/ contains the following data files: all_genomes.annotations.tar.gz all_genomes.diamond-blastp.tar.gz all_genomes.emapper.annotations.tar.gz all_genomes.ghostKOALA-KOs.tar.gz all_genomes.interproscan.tar.gz all_genomes.RBH.tar.gz These .tar.gz packages contain the genome annotation data files for the genomes of the "core" dataset of the article. Genome annotations have been generated as outlined in the article using the following tools and methods: DIAMOND blastp, eggNOG-mapper (emapper), GhostKOALA, InterProScan, and the reciprocal best blast hit algorithm (RBH). Moreover, all annotations, with the exception of RBH annotations, have been compiled into an overview table (all_genomes.annotations.tar.gz). 2. CORE-dataset_Gene_Phylogenies/ contains the following folders: bchY/ creS_ALL/ creS_SUBSET/ pufM/ These folders corres…
modified: 2025-12-12T15:57:12.585828Z
issued: 2025-06-19T09:38:50.862198Z
publisher: Stockholm University
access rights: PUBLIC
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Joel Hallgren
    type: Agent
    account: https://orcid.org/0000-0001-8602-8095
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Kristina Jonas
    type: Agent
    account: https://orcid.org/0000-0002-1469-4424
    type: PrivateIndividual(s)
contact point: Individual
  fn: Kristina Jonas
keyword: phylogenetic tree
keyword: microbiology
keyword: phylogenetic relationship
keyword: phylogenetic diversity
keyword: bacteria
keyword: DNA sequence analysis
keyword: microbial ecology
keyword: phylogenetic analysis
keyword: bacterial diversity
keyword: bioinformatics
keyword: bioinformatik @sv
keyword: cell biology
keyword: cellbiologi @sv
keyword: genome
keyword: parvularculaceae garrity et al., 2003
keyword: caulobacterales henrici & johnson, 1935
keyword: alphaproteobacteria garrity et al., 2006
keyword: hyphomonadaceae lee et al., 2005
keyword: caulobacteraceae henrici & johnson, 1935
keyword: caulobacter vibrioides henrici & johnson, 1935
keyword: Caulobacter crescentus (syn. Caulobacter vibrioides)
language: ENG

Landing page for the dataset
type: Distribution
title: Landningssida för datasetet @sv
access URL: Data for: "Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales" (Hallgren et al., 2025)
availability: stable

Stockholm University
type: Agent
name: Stockholms universitet @sv
type: Academia-ScientificOrganisation
source: 05f0yaq80