Genotype data for analysis of chronic kidney disease in boxer dogs
type: Dataset
distribution: Landing page for the dataset
description: Genotype data of 254 boxer samples were used for the Bayesian analysis of chronic kidney disease (CKD). In this study, we aimed to uncover the genetic loci that contribute to canine CKD in a young boxer population by comparing the cases and controls boxers from different countries. These genome-wide genotypes were generated with illumina 170K CanineHD BeadChip, and stored in plink format. Details for the plink bed format is available: https://www.cog-genomics.org/plink/1.9/strat. Only autosomal markers were kept for the analysis, and markers with genotyping rate < 95% and minor allele frequency < 1% were excluded. The coordinates of markers in CKD_254boxers.bim are based on the Canfam4 reference assembly (http://genome-euro.ucsc.edu/cgi-bin/hgTracks?db=canFam4). The sex and phenotype information were listed in the column 5 and 6 in CKD_254boxers.fam.
modified: 2022-11-01T00:00:00Z
issued: 2022-07-05T00:00:00Z
publisher: Uppsala University
theme: HEAL
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Chao Wang
    type: Agent
    account: https://orcid.org/0000-0003-3936-4023
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Kerstin Lindblad-Toh
    type: Agent
    account: https://orcid.org/0000-0001-8338-0253
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Frode Lingaas
    type: Agent
    type: PrivateIndividual(s)
keyword: Gene mapping
keyword: Genomics

Landing page for the dataset
type: Distribution
title: Landningssida för datasetet @sv
access URL: Genotype data for analysis of chronic kidney disease in boxer dogs
availability: stable

Uppsala University
type: Agent
name: Uppsala universitet @sv
type: Academia-ScientificOrganisation
source: https://ror.org/048a87296