Whole genome analyses based on single, field collected spores of the AMF F.geosporum
type: Dataset
description: The item contains data and figures supporting the publication with the same name. In this study we sequenced nuclei and assembled genomes for two spores from an arbuscular mycorrhizal fungi morphotypically identified as Funneliforms geosporum. The spores were collected at the Kunsgängen nature reserve just south of Uppsala, Sweden. The file "Spore nuclie scatter plots and MDA results for ..." contains information on the spores from which nuclei were sorted in this project including FACS scatterplot, well positions, MDA, PCR screening for bacteria and fungi as well as a list of which nuclei were selected for sequening. The zipped folder "Alignments for species identification.zip" contains alignments and phylogenetic trees for there reference genes (Fox, LSU and Tor) used for species identification of the morphotyped spores agains known species. The file "Alignment of MAT contigs from all funneliformis.phy" contains one contig from each of the four Funneliformis genome assemblies with a gene homologous to one of the genes in the mating type locus identified in Rhizophagus irregulars, gene bank accession number KT946687 The file "Alignment of MAT contigs from all funneliformis extraction.fasta" contains the region from each of the four contigs that was extracted from the above alignment and used to Blast all single nuclei assemblies for potential mating type locus homologues. The two excel files "Fig 3a..." and "Fig 3b..." contains the FunAnnotate output for gene families CAZyme and MEROPS and calculations for Fig 3a and b.
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Shadi Eshghi Sahraei
  type: Person
  family name: Eshghi Sahraei
  given name: Shadi
creator: Marisol Sanchez Garcia
creator: Merce Montoliu-Nerin
  type: Person
  family name: Montoliu-Nerin
  given name: Merce
creator: David Manyara
  type: Person
  family name: Manyara
  given name: David
creator: Claudia Bergin
  type: Person
  family name: Bergin
  given name: Claudia
creator: Søren Rosendahl
  type: Person
  family name: Rosendahl
  given name: Søren
creator: Anna Rosling
date modified: 2022-09-12
date published: 2022-09-12
keywords: Medical and Health Sciences
  type: DefinedTerm
  term code: 3
keywords: Environmental Sciences
  type: DefinedTerm
  term code: 10502
keywords: Other environmental sciences not elsewhere classified
license: https://creativecommons.org/licenses/by/4.0/
publisher: Uppsala University
version: 0

PropertyValue
property ID: DOI
value: 10.17044/SCILIFELAB.20120150

Marisol Sanchez Garcia
type: Person
family name: Sanchez Garcia
given name: Marisol

Anna Rosling
type: Person
affiliation: Science for Life Laboratory
family name: Rosling
given name: Anna

Science for Life Laboratory
type: Organization

Uppsala University
type: Organization