Data from: Single-cell profiling of muscle-infiltrating T cells in idiopathic inflammatory myopathies
type: Dataset
description: The dataset corresponds to the study by Argyriou, Horuluoglu, Galindo-Feria et. al. Single-cell profiling of muscle-infiltrating T cells in idiopathic inflammatory myopathies. It contains the FASTQ files trimmed by adaptors of RNA-sequencing from single T-cells. There are 3840 cells from muscle biopsies and matched peripheral blood from six donors with idiopathic inflammatory myopathies and one with undefined myopathy. The cells were sorted using flow cytometry, and RNA-sequencing libraries were generated with the Smartseq2 at the Eukaryotic Single-cell Genomics facility at Science for Life Laboratory in Stockholm, Sweden. Libraries were sequenced on an Illumina Nova seq 6000 (2*100bp) at NGI Stockholm sequencing core facilities, Science for Life Laboratory in Stockholm, Sweden. Additionally, there are smart-seq-3 single-cell transcriptomics from 439 memory T cells from peripheral blood from three healthy donors. Terms for access The dataset is only to be used for medical research seeking to advance the fields of immunology, autoimmune diseases, or genetics. After justification and discussion with the study's authors, other research areas could be considered. To access the dataset, investigators must sign a data transfer agreement with the dataset owners and comply with EU General Data Protection Regulation. The investigators granted access to the dataset must commit to only using it for the research described in their application. The data set should not be shared with other parties. For conditional access to the dataset in this publication, please get in touch with datacentre@scilifelab.se
conditions of access: https://publications.europa.eu/resource/authority/access-right/NON_PUBLIC
conditions of access: info:eu-repo/semantics/restrictedAccess
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Alexandra Argyriou
  type: Person
  affiliation: Science for Life Laboratory
  family name: Argyriou
  given name: Alexandra
creator: Begum Horuluoglu
  type: Person
  affiliation: Science for Life Laboratory
  family name: Horuluoglu
  given name: Begum
creator: Angeles S. Galindo-Feria
  type: Person
  family name: Galindo-Feria
  given name: Angeles S.
creator: Juan Sebastian Diaz Boada
  type: Person
  affiliation: Science for Life Laboratory
  family name: Diaz Boada
  given name: Juan Sebastian
creator: Merel Sijbranda
  type: Person
  family name: Sijbranda
  given name: Merel
creator: Antonella Notarnicola
creator: Lara Dani
  type: Person
  family name: Dani
  given name: Lara
creator: Annika Van Vollenhoven
creator: Daniel Ramsköld
creator: Inger Nennesmo
creator: Maryam Dastmalchi
  type: Person
  family name: Dastmalchi
  given name: Maryam
creator: Ingrid E. Lundberg
  type: Person
  family name: Lundberg
  given name: Ingrid E.
creator: Lina Marcela Diaz Gallo
  type: Person
  affiliation: Science for Life Laboratory
  family name: Diaz Gallo
  given name: Lina Marcela
creator: Karine Chemin
date modified: 2023-06-28
date published: 2023-06-28
keywords: Medical and Health Sciences
  type: DefinedTerm
  term code: 3
keywords: Immunology
  type: DefinedTerm
  term code: 10605
keywords: Other Health Sciences
  type: DefinedTerm
  term code: 30399
keywords: Other health sciences not elsewhere classified
keywords: Immunology not elsewhere classified
keywords: Immunogenetics (incl. genetic immunology)
publisher: Karolinska Institutet
version: 0

PropertyValue
property ID: DOI
value: 10.17044/SCILIFELAB.21361029

Science for Life Laboratory
type: Organization

Antonella Notarnicola
type: Person
family name: Notarnicola
given name: Antonella

Annika Van Vollenhoven
type: Person
family name: Van Vollenhoven
given name: Annika

Daniel Ramsköld
type: Person
family name: Ramsköld
given name: Daniel

Inger Nennesmo
type: Person
family name: Nennesmo
given name: Inger

Karine Chemin
type: Person
family name: Chemin
given name: Karine

Karolinska Institutet
type: Organization