RNAseq-derived Read Counts for Primary and Locally Recurring Breast Cancers
type: Dataset
distribution: Landing page for the dataset
description: Read counts from RNAseq analysis for all 75 breast cancer samples included in the study "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. "RNA.RAW.COUNTS" for all genes are reported here. "RNA.SCALED.COUNTS" report on filtered (for missing data) reads with matching Uniprot/swissprot identifier. Reads were then scaled and centered across samples and genes. This dataset was used for Figure 3 in the following manuscript: "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. accepted for publication
modified: 2023-01-25T00:00:00Z
issued: 2023-01-25T00:00:00Z
publisher: Lund University
theme: HEAL
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Tommaso de Marchi
    type: Agent
    account: https://orcid.org/0000-0002-4845-1084
    type: PrivateIndividual(s)
keyword: Genomics and transcriptomics
keyword: Proteomics and metabolomics

Landing page for the dataset
type: Distribution
title: Landningssida för datasetet @sv
access URL: RNAseq-derived Read Counts for Primary and Locally Recurring Breast Cancers
availability: stable

Lund University
type: Agent
name: Lunds universitet @sv
type: Academia-ScientificOrganisation
source: 012a77v79