RNAseq-derived Read Counts for Primary and Locally Recurring Breast Cancers
type: Dataset
description: Read counts from RNAseq analysis for all 75 breast cancer samples included in the study "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. "RNA.RAW.COUNTS" for all genes are reported here. "RNA.SCALED.COUNTS" report on filtered (for missing data) reads with matching Uniprot/swissprot identifier. Reads were then scaled and centered across samples and genes. This dataset was used for Figure 3 in the following manuscript: "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. accepted for publication
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Tommaso de Marchi
date modified: 2023-01-25
date published: 2023-01-25
keywords: Medical and Health Sciences
  type: DefinedTerm
  term code: 3
keywords: Genetics and Genomics
  type: DefinedTerm
  term code: 10609
keywords: Genomics and transcriptomics
keywords: Proteomics and metabolomics
license: https://creativecommons.org/licenses/by/4.0/
publisher: Lund University
version: 0

PropertyValue
property ID: DOI
value: 10.17044/SCILIFELAB.21904581

Tommaso de Marchi
type: Person
affiliation: Science for Life Laboratory
family name: de Marchi
given name: Tommaso

Science for Life Laboratory
type: Organization

Lund University
type: Organization