Cancer Genes Variant Calling of Matched Primary and Recurrent Breast Cancers
type: Dataset
distribution: Landing page for the dataset
description: Mutational call table for genes included in COSMIC cancer gene census, the FoundationOne® gene list, genes part of the Memorial Sloan Kettering IMPACT platform, and the list of reported BC driver genes. "SNV.table" reports on aforementioned mutation list for each sample. "SNV.LOGICAL" reports on filtered mutations (i.e. high and moderate impact + missense mutations) for each sample (logical: 0 wild-type, 1 mutated). "SNV.CATEGORICAL.GAIN.LOSS" reports on pairwise mutational changes between recurrent and primary tumors (categorical: -1 loss, 0 no change, +1 gain). This dataset was used for Figure 3 in the following manuscript: "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. accepted for publication
modified: 2023-01-25T00:00:00Z
issued: 2023-01-25T00:00:00Z
publisher: Lund University
theme: HEAL
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Tommaso de Marchi
    type: Agent
    account: https://orcid.org/0000-0002-4845-1084
    type: PrivateIndividual(s)
keyword: Genomics and transcriptomics
keyword: Proteomics and metabolomics

Landing page for the dataset
type: Distribution
title: Landningssida för datasetet @sv
access URL: Cancer Genes Variant Calling of Matched Primary and Recurrent Breast Cancers
availability: stable

Lund University
type: Agent
name: Lunds universitet @sv
type: Academia-ScientificOrganisation
source: 012a77v79