Pug dog thoracolumbar myelopathy
type: Dataset
description: The datasets consist of genotype data from pug dogs in plink format used for the study Multiple genetic loci associated with pug dog thoracolumbar myelopathy. PDM plink files are QC:ed (--maf 0.01 --geno 0.05 --mind 0.05 and --hwe 1e-10) and relatedness filtered at a threshold of 0.177, including 89 dogs of which 51 were affected by pug dog thoracolumbar myelopathy and 38 were unaffected controls. Genotyping technique is indicated in the FIID column, with GC indicating Gencove low-pass sequenced dogs using Pipeline Dog low pass v2 with 676 dogs in the reference panel and GW indicating genotyped dogs using Illumina 230k CanineHD BeadChip. Chromosomal coordinates are based on the dog CanFam3.1 genome assembly.
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Gustaf Brander
date modified: 2023-06-01
date published: 2023-03-06
keywords: Medical and Health Sciences
  type: DefinedTerm
  term code: 3
keywords: Genetics and Genomics
  type: DefinedTerm
  term code: 10609
keywords: Gene mapping
license: https://creativecommons.org/licenses/by/4.0/
publisher: Uppsala University
version: 0

PropertyValue
property ID: DOI
value: 10.17044/SCILIFELAB.21948521

Gustaf Brander
type: Person
affiliation: Science for Life Laboratory
family name: Brander
given name: Gustaf

Science for Life Laboratory
type: Organization

Uppsala University
type: Organization