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        <parTitl xml:lang="en">Atlas of 5'P mRNA decay in bacteria</parTitl>
        <IDNo agency="SND">doi-10-17044-scilifelab-22284709-0</IDNo>
        <IDNo agency="DOI">https://doi.org/10.17044/SCILIFELAB.22284709</IDNo>
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        <producer xml:lang="en" abbr="SND">Swedish National Data Service</producer>
        <producer xml:lang="sv" abbr="SND">Svensk nationell datatjänst</producer>
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      <holdings URI="https://doi.org/10.17044/SCILIFELAB.22284709">Landing page</holdings>
    </citation>
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  <stdyDscr>
    <citation>
      <titlStmt>
        <titl xml:lang="sv"></titl>
        <parTitl xml:lang="en">Atlas of 5'P mRNA decay in bacteria</parTitl>
        <IDNo agency="SND">doi-10-17044-scilifelab-22284709-0</IDNo>
        <IDNo agency="DOI">https://doi.org/10.17044/SCILIFELAB.22284709</IDNo>
      </titlStmt>
      <rspStmt>
        <AuthEnty xml:lang="en" affiliation="Science for Life Laboratory">Pelechano, Vicent</AuthEnty>
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      <prodStmt />
      <distStmt>
        <distrbtr xml:lang="en" abbr="SND" URI="https://snd.se">Swedish National Data Service</distrbtr>
        <distrbtr xml:lang="sv" abbr="SND" URI="https://snd.se">Svensk nationell datatjänst</distrbtr>
        <distDate xml:lang="en" date="2023-03-30" />
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      <holdings URI="https://doi.org/10.17044/SCILIFELAB.22284709">Landing page</holdings>
    </citation>
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      <subject />
      <abstract xml:lang="en" contentType="abstract">Regulation of mRNA stability is a central process in gene expression. Here, report an atlas of 5´ monophosphorylated mRNA decay intermediates (5´P) in 96 species. We use those data to demonstrate that in species with 5´-3´exonuclease activity, the exoribonuclease RNase J follows the trailing ribosome, producing an in vivo single-nucleotide toeprint of its 5´ position. While in other species, ribosome position alters endonucleolytic cleavage sites. Our work demonstrates the universal connection between RNA decay and translation and paves the way for use of metadegradome sequencing to investigate post-transcriptional regulation of unculturable species present and complex microbial communities.

Data was analyzed using our fivepseq software.  Improved computational analysis of ribosome dynamics from 5′P degradome data using fivepseq (https://doi.org/10.1093/nargab/lqaa099) . Lilit Nersisyan, Maria Ropat &amp; Vicent Pelechano. NAR Genomics and Bioinformatics, Volume 2, Issue 4, December 2020, lqaa099, https://doi.org/10.1093/nargab/lqaa099</abstract>
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        <restrctn xml:lang="en">Access to data through an external actor. </restrctn>
        <restrctn xml:lang="sv">Åtkomst till data via extern aktör. </restrctn>
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