Repeat annotation of Linum trigynum
The file contains the annotation fo the repetitive regions in *Linum trigynum*. The detection of Repeat has been done with [RepeatMasker/RepeatModeler](https://www.repeatmasker.org/) using a custom repeat library. The genome has been deposited to [ENA](https://www.ebi.ac.uk/ena/browser/home) with the accession id: GCA_964030455 (project PRJEB67577). It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087 The file is in BED format converted with [BEDOPS](https://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/rmsk2bed.html). The fourth (Repeat class) and eleventh (Repeat name) columns have been reversed to highlight the Repeat name in the visualization. Query sequence 1 chromosome Query start 2 start Query end 3 stop Repeat class 4 id Smith-Waterman score 5 score Strand 6 strand Percentage, substitutions 7 Percentage, deleted bases 8 Percentage, inserted bases 9 Bases in query, past match 10 Repeat name 11 Bases in complement of the repeat consensus sequence 12 Match start 13 Match end 14 Unique ID 15 Higher-scoring match (optional) 16
Evolutionary ecology
Landing page for the dataset
Landningssida för datasetet
Stockholm University
Stockholms universitet