Repeat annotation of Linum tenue doi-10-17044-scilifelab-24343000-0 https://doi.org/10.17044/SCILIFELAB.24343000 Swedish National Data Service Svensk nationell datatjänst Landing page Repeat annotation of Linum tenue doi-10-17044-scilifelab-24343000-0 https://doi.org/10.17044/SCILIFELAB.24343000 Fracassetti, Marco Slotte, Tanja Nystedt, Björn Laenen, Benjamin Swedish National Data Service Svensk nationell datatjänst Landing page The file contains the annotation for the repetitive regions in Linum tenue . The detection of repeats has been done with RepeatMasker/RepeatModeler (https://www.repeatmasker.org/) using a custom repeat library. The genome has been deposited to ENA with the accession id: GCA_946122785 (Project PRJEB52918). See link below. It is part of this article Gutiérrez-Valencia, J., Fracassetti, M., Berdan, E. L., Bunikis, I., Soler, L., Dainat, J., ... & Slotte, T. (2022). Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level. Current Biology , 32 (20), 4360-4371. 10.1016/j.cub.2022.08.042 The file is in BED format converted with [BEDOPS](https://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/rmsk2bed.html). The fourth (Repeat class) and eleventh (Repeat name) columns have been reversed to highlight the Repeat name in the visualization. Query sequence 1 chromosome Query start 2 start Query end 3 stop Repeat class 4 id Smith-Waterman score 5 score Strand 6 strand Percentage, substitutions 7 Percentage, deleted bases 8 Percentage, inserted bases 9 Bases in query, past match 10 Repeat name 11 Bases in complement of the repeat consensus sequence 12 Match start 13 Match end 14 Unique ID 15 Higher-scoring match (optional) 16 Access to data through an external actor. Åtkomst till data via extern aktör.