SCILIFELAB.25315867
type: Dataset
name: Supplementary data associated with two publications contrasting gene expression during somatic and zygotic embryo development and identifying long intergenic non coding RNAs during somatic embryogenesis
description: RNA-Seq data was generated from stages of somatic (SE) and zygotic embryogenesis (ZE). The developing zygotes (Zem) were isolated from the female megagametyophyte (FG) tissue at later stages. Differential expression analysis was performed for each dataset and the results were compared to identify common and contrasting expression changes. The somatic embryogenesis data was used to predict long intergenic RNAs and a co-expression network was generated. The network was used to assign putative functional annotation to the lincRNAs using a guilt-by-association approach. The normalised expression values, results of differential expression test, results of functional enrichment of gene sets and figures representing these are included. The sequences of identified lncRNAs are included as well as annotation information. The data is structured in three folders: SE = Somatic Embryogenesis ZE = Zygotic Embryogenesis SE_ZE = All files related to the comparison of differentially expressed genes between the two datasets. Some of the file names or figures can contain abbreviations different from the ones in the original publications. A conversion table is provided in the README file. More information on the folder and file content can be found in the manifest file.
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Nathaniel Street
creator: Katja Stojkovič
  type: Person
  family name: Stojkovič
  given name: Katja
creator: Ulrika Egertsdotter
  type: Person
  family name: Egertsdotter
  given name: Ulrika
creator: Kim-Cuong Le
  type: Person
  family name: Le
  given name: Kim-Cuong
creator: Nicolas Delhomme
  type: Person
  family name: Delhomme
  given name: Nicolas
creator: Camilla Canovi
  type: Person
  family name: Canovi
  given name: Camilla
date modified: 2024-10-01
date published: 2024-10-01
keywords: Medical and Health Sciences
  type: DefinedTerm
  term code: 3
keywords: Genetics and Genomics
  type: DefinedTerm
  term code: 10609
keywords: Biological Sciences
  type: DefinedTerm
  term code: 106
keywords: Plant developmental and reproductive biology
keywords: Genomics and transcriptomics
keywords: Biological network analysis
license: https://creativecommons.org/licenses/by/4.0/
publisher: Umeå University
version: 0

PropertyValue
property ID: DOI
value: 10.17044/SCILIFELAB.25315867

Nathaniel Street
type: Person
affiliation: Science for Life Laboratory
family name: Street
given name: Nathaniel

Science for Life Laboratory
type: Organization

Umeå University
type: Organization