MINUTE-ChIP example data
type: Dataset
description: This collection contains an example MINUTE-ChIP dataset to run minute pipeline on, provided as supporting material to help users understand the results of a MINUTE-ChIP experiment from raw data to a primary analysis that yields the relevant files for downstream analysis along with summarized QC indicators. Example primary non-demultiplexed FASTQ files provided here were used to generate GSM5493452-GSM5493463 (H3K27m3) and GSM5823907-GSM5823918 (Input), deposited on GEO with the minute pipeline all together under series GSE181241. For more information about MINUTE-ChIP, you can check the publication (https://www.nature.com/articles/s41556-022-00916-w) relevant to this dataset: Kumar, Banushree, et al. "Polycomb repressive complex 2 shields naïve human pluripotent cells from trophectoderm differentiation." Nature Cell Biology 24.6 (2022): 845-857. If you want more information about the minute pipeline, there is a public biorXiv (https://www.biorxiv.org/content/10.1101/2022.03.14.484318v1) and a GitHub repository (https://github.com/elsasserlab/minute) and official documentation (https://minute.readthedocs.io/en/latest/) .
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Carmen Navarro Luzon
creator: Simon Elsässer
date modified: 2024-05-07
date published: 2024-05-07
funding: Dynamic interplay of Polycomb complexes in establishing and maintaining cellular memory
  type: Grant
  funder: Swedish Research Council
funding: NAISS
  type: Grant
  funder: Swedish Research Council
is part of: https://doi.org/10.1038/s41556-022-00916-w
keywords: Medical and Health Sciences
  type: DefinedTerm
  term code: 3
keywords: Genetics and Genomics
  type: DefinedTerm
  term code: 10609
keywords: Genomics and transcriptomics
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
publisher: Karolinska Institutet
version: 0

PropertyValue
property ID: DOI
value: 10.17044/SCILIFELAB.25348405

Carmen Navarro Luzon
type: Person
affiliation: Science for Life Laboratory
family name: Navarro Luzon
given name: Carmen

Science for Life Laboratory
type: Organization

Simon Elsässer
type: Person
affiliation: Science for Life Laboratory
family name: Elsässer
given name: Simon

Swedish Research Council
type: Organization

Karolinska Institutet
type: Organization