Supplemental data from the genome assembly and annotation of the Clouded Apollo Butterfly (Parnassius mnemosyne)
type: Dataset
description: This dataset contains supplementary data from the genome sequencing of the Clouded Apollo Butterfly (Parnassius mnemosyne), published in: Höglund, J., Dias, G., Olsen, R. A., Soares, A., Bunikis, I., Talla, V., & Backström, N. (2024). A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern. Genome Biology and Evolution, 16(2), evae031. https://doi.org/10.1093/gbe/evae031 Previous data from the project has been deposited at the European Nucleotide Archive (ENA) in the umbrella project PRJEB76269 (https://www.ebi.ac.uk/ena/browser/view/PRJEB76269) . The data contained in this archive at SciLifeLab Data Repository describe the genome assembly (ENA accession: GCA_963668995.1 (https://www.ebi.ac.uk/ena/browser/view/GCA_963668995.1) ), and the mitochondrial genome assembly (ENA accession: OZ075093.1 (https://www.ebi.ac.uk/ena/browser/view/OZ075093.1) ). Below follows a brief description of each file. The information on the methods used to generate the files was adapted from Höglund et al. 2024. - pmne_functional_edit1.gff.gz contains the functional annotation (protein coding genes) of the primary genome assembly (GCA_963668995.1 (https://www.ebi.ac.uk/ena/browser/view/GCA_963668995.1) ). This is the original file that was submitted to ENA. A derived version of the file is available from NCBI; the NCBI version was generated from the EMBL records of each annotated gene and differs in that it for instance use a different naming scheme for the seqid column and the locus tags. The NCBI version is available at this link (https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/963/668/995/GCA_963668995.1_Parnassius_mnemosyne_n_2023_11/GCA_963668995.1_Parnassius_mnemosyne_n_2023_11_genomic.gff.gz) . The genes were predicted using BRAKER (v3.03), GALBA (v1.0.6), and GeneMarkS-T (v5.1). The resulting gene models were combined and filtered using TSEBRA (version: long_reads branch commit 1f2614). The com…
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Jacob Höglund
  type: Person
  family name: Höglund
  given name: Jacob
creator: Guilherme Dias
  type: Person
  family name: Dias
  given name: Guilherme
creator: Remi-André Olsen
  type: Person
  family name: Olsen
  given name: Remi-André
creator: André Soares
  type: Person
  family name: Soares
  given name: André
creator: Ignas Bunikis
  type: Person
  family name: Bunikis
  given name: Ignas
creator: Venkat Talla
  type: Person
  family name: Talla
  given name: Venkat
creator: Niclas Backström
  type: Person
  family name: Backström
  given name: Niclas
date modified: 2024-06-26
date published: 2024-06-26
funding: Molecular mechanisms and evolutionary forces underlying recombination frequency in butterflies
  type: Grant
  funder: Swedish Research Council
keywords: Medical and Health Sciences
  type: DefinedTerm
  term code: 3
keywords: Genetics and Genomics
  type: DefinedTerm
  term code: 10609
keywords: Genomics
keywords: Genomics and transcriptomics
keywords: Invertebrate biology
license: https://creativecommons.org/licenses/by/4.0/
publisher: Uppsala University
version: 0

PropertyValue
property ID: DOI
value: 10.17044/SCILIFELAB.25908748

Swedish Research Council
type: Organization

Uppsala University
type: Organization