Data for metabolomics and transcriptomics resources for the identification of candidate genes in the biosynthesis of specialized metabolites in Populus tremula (L).
type: Dataset
description: Despite their importance, the pathways and enzymes associated with the biosynthesis of many specialized metabolites are yet to be characterized. The integration of multi-omics data represents a powerful approach to link genes encoding enzymes and their regulatory factors to metabolite biosynthesis. However, suitable multi-omics data resources for this approach are scarce. Here we present a data resource comprising Liquid Chromatography Mass Spectrometry (LC-MS) and mRNA-Sequencing data from European aspen (Populus tremula L.) including tissues sampled from different organs, and genotypes that produce contrasting sets of salicinoid phenolic glucosides (SPGs), that are specialized metabolites characteristic for Salicaceae.
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Sara M. Rydman
  type: Person
  family name: M. Rydman
  given name: Sara
creator: Kathryn Robinson
creator: Jenna Lihavainen
creator: Benedicte R. Albrectsen
creator: Stefan Jansson
  type: Person
  family name: Jansson
  given name: Stefan
creator: Nathaniel Street
date modified: 2025-03-25
date published: 2025-03-25
funding: Engineering specialised metabolism in aspen
  type: Grant
  funder: Swedish Research Council for Environment Agricultural Sciences and Spatial Planning
keywords: Medical and Health Sciences
  type: DefinedTerm
  term code: 3
keywords: Genetics and Genomics
  type: DefinedTerm
  term code: 10609
keywords: Plant biochemistry
keywords: Biological network analysis
keywords: Genomics and transcriptomics
keywords: Gene expression (incl. microarray and other genome-wide approaches)
license: https://creativecommons.org/licenses/by/4.0/
publisher: Umeå University
version: 0

PropertyValue
property ID: DOI
value: 10.17044/SCILIFELAB.27336156

Kathryn Robinson
type: Person
affiliation: Science for Life Laboratory
family name: Robinson
given name: Kathryn

Science for Life Laboratory
type: Organization

Jenna Lihavainen
type: Person
family name: Lihavainen
given name: Jenna

Benedicte R. Albrectsen
type: Person
family name: Albrectsen
given name: Benedicte R.

Nathaniel Street
type: Person
affiliation: Science for Life Laboratory
family name: Street
given name: Nathaniel

Swedish Research Council for Environment Agricultural Sciences and Spatial Planning
type: Organization

Umeå University
type: Organization