Data for 'An interactive web resource for exploring equine BAL cell scRNA-seq data'
type: Dataset
distribution: Landing page for the dataset
description: This dataset contains the count matrices required to reproduce the web application for interactive visualization of single-cell RNA-seq (scRNA-seq) data from equine bronchoalveolar lavage (BAL) cells. The Shiny app is available at: https://equbal-explorer.serve.scilifelab.se/app/equbal-explorer hosted by SciLifeLab serve. The web application can be recreated using the scripts provided in the associated GitHub repository: https://github.com/Molmed/EquBAL_explorer. The scRNA-seq data were generated from 21 clinical equine asthma cases and 8 healthy controls using the HIVE and Drop-seq platforms. Details of the laboratory procedures and the generation of the count matrices are described in the original publications: https://doi.org/10.1038/s41598-023-43368-4 and https://doi.org/10.1371/journal.pone.0317343. Raw sequencing data is available at SRA as described in these papers. A phenotype file is also provided, containing BAL cytology and other phenotypic information for the samples included in the web application.
modified: 2025-05-15T00:00:00Z
issued: 2025-05-15T00:00:00Z
publisher: Uppsala University
theme: HEAL
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Julia Sulayeva
    type: Agent
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Kim Fegraeus
    type: Agent
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Miia Riihimäki
    type: Agent
    account: https://orcid.org/0000-0002-9766-1440
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Jessica Nordlund
    type: Agent
    account: https://orcid.org/0000-0001-8699-9959
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Amanda Raine
    type: Agent
    account: https://orcid.org/0000-0002-2775-6516
    type: PrivateIndividual(s)
keyword: Veterinary immunology
keyword: Veterinary medicine (excl. urology)

Landing page for the dataset
type: Distribution
title: Landningssida för datasetet @sv
access URL: Data for 'An interactive web resource for exploring equine BAL cell scRNA-seq data'
availability: stable

Uppsala University
type: Agent
name: Uppsala universitet @sv
type: Academia-ScientificOrganisation
source: https://ror.org/048a87296