Data for 'An interactive web resource for exploring equine BAL cell scRNA-seq data'
This dataset contains the count matrices required to reproduce the web application for interactive visualization of single-cell RNA-seq (scRNA-seq) data from equine bronchoalveolar lavage (BAL) cells. The Shiny app is available at: https://equbal-explorer.serve.scilifelab.se/app/equbal-explorer hosted by SciLifeLab serve. The web application can be recreated using the scripts provided in the associated GitHub repository: https://github.com/Molmed/EquBAL_explorer. The scRNA-seq data were generated from 21 clinical equine asthma cases and 8 healthy controls using the HIVE and Drop-seq platforms. Details of the laboratory procedures and the generation of the count matrices are described in the original publications: https://doi.org/10.1038/s41598-023-43368-4 and https://doi.org/10.1371/journal.pone.0317343. Raw sequencing data is available at SRA as described in these papers. A phenotype file is also provided, containing BAL cytology and other phenotypic information for the samples included in the web application.
Veterinary immunology
Veterinary medicine (excl. urology)
Landing page for the dataset
Landningssida för datasetet
Uppsala University
Uppsala universitet