Linum grandiflorum haplotype 1 assembly and gene annotation
type: Dataset
distribution: Landing page for the dataset
description: This dataset contains the fasta file (Lgrand_hap1_v1.fasta.gz) and the gene annotation (Lgrand_hap1_v1_genes.gff.gz) of Linum grandiflorum haplotype 1 assembly. The annotated assembly has been deposited in the European Nucleotide Archive, ENA (Project PRJEB87190) but it is missing the assembly accession (GCA_123456). Only the EMBL file is present. The genome assembly is based on PacBio HiFi and Hi-C data using Hifiasm (https://github.com/chhylp123/hifiasm). The gene annotation has been done with MAKER (https://www.yandell-lab.org/software/maker.html) and manually curated by NBIS. This dataset is associated with this article: Zervakis, P. I., Postel, Z., Losvik, A., Fracassetti, M., Solér, L., Proux‐Wéra, E., ... & Slotte, T. (2025). Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution. New Phytologist, 247(6), 2964-2981.
modified: 2026-02-25T00:00:00Z
issued: 2026-02-25T00:00:00Z
publisher: Stockholm University
theme: HEAL
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Marco Fracassetti
    type: Agent
    account: https://orcid.org/0000-0002-2962-2669
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Panagiotis Zervakis
    type: Agent
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Zoe Postel
    type: Agent
    account: https://orcid.org/0000-0003-0502-2375
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Aleksandra Losvik
    type: Agent
    account: https://orcid.org/0000-0001-7669-9266
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Lucile Soler
    type: Agent
    account: https://orcid.org/0000-0002-0121-2393
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Estelle Proux‐Wéra
    type: Agent
    account: https://orcid.org/0000-0003-3752-1806
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Ignas Bunikis
    type: Agent
    account: https://orcid.org/0009-0008-8375-0451
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Allison Churcher
    type: Agent
    account: https://orcid.org/0000-0003-1902-3002
    type: PrivateIndividual(s)
qualified attribution: Attribution
  had role: principalInvestigator
  agent: Tanja Slotte
    type: Agent
    type: PrivateIndividual(s)
keyword: Evolutionary ecology

Landing page for the dataset
type: Distribution
title: Landningssida för datasetet @sv
access URL: Linum grandiflorum haplotype 1 assembly and gene annotation
availability: stable

Stockholm University
type: Agent
name: Stockholms universitet @sv
type: Academia-ScientificOrganisation
source: 05f0yaq80