pciSeq files in csv format
type: Dataset
description: This figshare data set contains more easily accessible format of files included in figshare dataset https://doi.org/10.6084/m9.figshare.7150760 In situ sequencing (ISS) is a technology to sequence RNA directly inside tissue sections, and probabilistic cell typing by ISS (pciSeq) method is a method to spatially map single-cell RNA-sequencing defined cell types. (See Associated Publication) * spots_whole_section files have three columns: genes, X and Y position * mask files contain polygon coordinates of CA1 regions * cells files have cell ID, X and Y position of cells in CA1, and sum of probabilities of all assigned reads. * spots_w_segmentation files contain spot assignment results from pciSeq algorithm. * celltype files contain cell type assignment results from pciSeq algorithm.
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Xiaoyan Qian
creator: Kenneth Harris
creator: Thomas Hauling
creator: Dimitris Nicoloutsopoulos
creator: Ana B. Munoz-Manchado
creator: Nathan Skene
creator: Jens Hjerling-Leffler
creator: Mats Nilsson
date modified: 2019-11-19
date published: 2019-11-18
keywords: Cell and Molecular Biology
  type: DefinedTerm
  term code: 30108
keywords: Neurosciences
  type: DefinedTerm
  term code: 30105
keywords: Neuroscience
keywords: Molecular Biology
license: https://creativecommons.org/licenses/by/4.0/
publisher: Stockholm University
version: 0

PropertyValue
property ID: DOI
value: 10.17045/STHLMUNI.10318610

Xiaoyan Qian
type: Person

Stockholm University
type: Organization