<codeBook xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xsi:schemaLocation="ddi:codebook:2_5 http://www.ddialliance.org/Specification/DDI-Codebook/2.5/XMLSchema/codebook.xsd" xmlns="ddi:codebook:2_5">
  <docDscr>
    <citation>
      <titlStmt>
        <titl xml:lang="sv"></titl>
        <parTitl xml:lang="en">Spatial metatranscriptomics resolves host-bacteria-fungi interactomes, Source Data</parTitl>
        <IDNo agency="SND">doi-10-5281-zenodo-8308137-0</IDNo>
        <IDNo agency="DOI">https://doi.org/10.5281/zenodo.8308137</IDNo>
      </titlStmt>
      <prodStmt>
        <producer xml:lang="en" abbr="SND">Swedish National Data Service</producer>
        <producer xml:lang="sv" abbr="SND">Svensk nationell datatjänst</producer>
      </prodStmt>
      <holdings URI="https://doi.org/10.5281/zenodo.8308137">Landing page</holdings>
    </citation>
  </docDscr>
  <stdyDscr>
    <citation>
      <titlStmt>
        <titl xml:lang="sv"></titl>
        <parTitl xml:lang="en">Spatial metatranscriptomics resolves host-bacteria-fungi interactomes, Source Data</parTitl>
        <IDNo agency="SND">doi-10-5281-zenodo-8308137-0</IDNo>
        <IDNo agency="DOI">https://doi.org/10.5281/zenodo.8308137</IDNo>
      </titlStmt>
      <rspStmt>
        <AuthEnty xml:lang="en" affiliation="SciLifeLab, Department of Gene Technology, KTH Royal Institute of Technology, Stockholm, Sweden">Saarenpää, Sami</AuthEnty>
        <AuthEnty xml:lang="en" affiliation="Max Planck Institute for Biology Tübingen, Tübingen, Germany">Shalev, Or</AuthEnty>
        <AuthEnty xml:lang="en" affiliation="Max Planck Institute for Biology Tübingen, Tübingen, Germany">Ashkenazy, Haim</AuthEnty>
        <AuthEnty xml:lang="en" affiliation="Max Planck Institute for Biology Tübingen, Tübingen, Germany">Carlos, Vanessa</AuthEnty>
        <AuthEnty xml:lang="en" affiliation="Max Planck Institute for Biology Tübingen, Tübingen, Germany">Lundberg, Derek Severi</AuthEnty>
        <AuthEnty xml:lang="en" affiliation="Max Planck Institute for Biology Tübingen, Tübingen, Germany">Weigel, Detlef</AuthEnty>
        <AuthEnty xml:lang="en" affiliation="SciLifeLab, Department of Gene Technology, KTH Royal Institute of Technology, Stockholm, Sweden">Giacomello, Stefania</AuthEnty>
      </rspStmt>
      <prodStmt />
      <distStmt>
        <distrbtr xml:lang="en" abbr="SND" URI="https://snd.se">Swedish National Data Service</distrbtr>
        <distrbtr xml:lang="sv" abbr="SND" URI="https://snd.se">Svensk nationell datatjänst</distrbtr>
        <distDate xml:lang="en" date="2023-11-20" />
      </distStmt>
      <verStmt>
        <version elementVersion="0" elementVersionDate="2023-11-20" />
      </verStmt>
      <holdings URI="https://doi.org/10.5281/zenodo.8308137">Landing page</holdings>
    </citation>
    <stdyInfo>
      <subject />
      <abstract xml:lang="en" contentType="abstract">Source Data for a publication: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. 

Includes the data sets to generate the results. 

Contains five different experiment types:

- Pst  bacterial infiltration experiment
- Enrichment experiment with different array types
- Comparison between SmT vs. Amp-seq
- Outdoor-grown leaf experiments
- Sterile leaf experiment

For each of the experiments are included (if generated, see the README file):
- Gene count matrices
- Microbial taxa count matrices
- Bright field images
- Alignment files (Spot files)
- Putative microbial reads and related probe information
- Data for enrichment analysis
- Fluorescent images and corresponding fluorescent values</abstract>
      <sumDscr />
    </stdyInfo>
    <method>
      <dataColl />
    </method>
    <dataAccs>
      <useStmt>
        <restrctn xml:lang="en">Access to data through an external actor. Data are freely accessible.</restrctn>
        <restrctn xml:lang="sv">Åtkomst till data via extern aktör. Data är fritt tillgängliga.</restrctn>
        <conditions elementVersion="info:eu-repo-Access-Terms vocabulary">openAccess</conditions>
      </useStmt>
    </dataAccs>
    <othrStdyMat />
  </stdyDscr>
</codeBook>