Spatial metatranscriptomics resolves host-bacteria-fungi interactomes, Source Data
type: Dataset
description: Source Data for a publication: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. Includes the data sets to generate the results. Contains five different experiment types: - Pst bacterial infiltration experiment - Enrichment experiment with different array types - Comparison between SmT vs. Amp-seq - Outdoor-grown leaf experiments - Sterile leaf experiment For each of the experiments are included (if generated, see the README file): - Gene count matrices - Microbial taxa count matrices - Bright field images - Alignment files (Spot files) - Putative microbial reads and related probe information - Data for enrichment analysis - Fluorescent images and corresponding fluorescent values
conditions of access: http://publications.europa.eu/resource/authority/access-right/PUBLIC
conditions of access: info:eu-repo/semantics/openAccess
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Saarenpää, Sami
creator: Shalev, Or
creator: Ashkenazy, Haim
creator: Carlos, Vanessa
  type: Person
  affiliation: Max Planck Institute for Biology Tübingen, Tübingen, Germany
  family name: Carlos
  given name: Vanessa
creator: Lundberg, Derek Severi
creator: Weigel, Detlef
creator: Giacomello, Stefania
date modified: 2023-11-20
date published: 2023-11-20
language: English
is part of: https://zenodo.org/communities/kth/
keywords: Microbiology
  type: DefinedTerm
  term code: 10606
keywords: Spatial Transcriptomics
keywords: Spatial metaTranscriptomics
keywords: Transcriptomics
keywords: Microbe
keywords: Host-microbe interactions
license: https://creativecommons.org/licenses/by/4.0/
publisher: Royal Institute of Technology
version: 0

PropertyValue
property ID: DOI
value: 10.5281/zenodo.8308137

PropertyValue
property ID: URL
value: https://zenodo.org/records/8308137

PropertyValue
property ID: oai
value: oai:zenodo.org:8308137

Saarenpää, Sami
type: Person
affiliation: SciLifeLab, Department of Gene Technology, KTH Royal Institute of Technology, Stockholm, Sweden
family name: Saarenpää
given name: Sami

Shalev, Or
type: Person
affiliation: Max Planck Institute for Biology Tübingen, Tübingen, Germany
family name: Shalev
given name: Or

Ashkenazy, Haim
type: Person
affiliation: Max Planck Institute for Biology Tübingen, Tübingen, Germany
family name: Ashkenazy
given name: Haim

Lundberg, Derek Severi
type: Person
affiliation: Max Planck Institute for Biology Tübingen, Tübingen, Germany
family name: Lundberg
given name: Derek Severi

Weigel, Detlef
type: Person
affiliation: Max Planck Institute for Biology Tübingen, Tübingen, Germany
family name: Weigel
given name: Detlef

Giacomello, Stefania
type: Person
affiliation: SciLifeLab, Department of Gene Technology, KTH Royal Institute of Technology, Stockholm, Sweden
family name: Giacomello
given name: Stefania

English
type: Language
alternate name: eng

Royal Institute of Technology
type: Organization