CO1 Amplicon Sequence Variants of soil and leaf litter arthropod communities collected at Malaise traps from the Insect Biome Atlas project in Sweden
type: Dataset
description: Amplicon Sequence Variants of 418bp of CO1 from soil and leaf litter arthropod communities collected at Malaise traps from the Insect Biome Atlas project (https://www.insectbiomeatlas.org/) in Sweden, as described in the IBA data paper (https://doi.org/10.1038/s41597-025-05151-0) . This dataset was published via the SBDI ASV portal (https://asv-portal.biodiversitydata.se/) , and has been updated from 'Metadata only' to 'Occurrence' type. Occurrence data were compiled from the following IBA Figshare items: Processed ASV data from the Insect Biome Atlas Project v3: (https://figshare.scilifelab.se/articles/dataset/Processed_ASV_data_from_the_Insect_Biome_Atlas_Project/27202368/3) - cleaned_noise_filtered_cluster_taxonomy_SE.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/50067528) - spikeins_tax_SE.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/50067531) Amplicon sequence variants from the Insect Biome Atlas project v6: (https://figshare.scilifelab.se/articles/dataset/Amplicon_sequence_variants_from_the_Insect_Biome_Atlas_project/25480681/6) - co1_asv_counts_se.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/46381132) - co1_asv_seqs_se.fasta.gz (https://figshare.scilifelab.se/ndownloader/files/46381138) The following samples were excluded from this resource due to sequencing failure: P25259_1390, P25259_1407, P25259_1411, P25259_1420, P25259_1422, P25259_1423, P25259_1428, P25259_1431, P25259_1435, P25259_1436, P25259_1439, P25259_1440, P25259_1444, P25259_1452, P25259_1460, P25259_1467, P25259_1469, P25259_1476, P25259_1591, P25259_1594, P25259_1641, P25259_1649; or lack of non-zero counts for annotated ASVs: P25259_1438, P25259_1455, P25259_1471, P25259_1475, P25259_1586, P25259_1661, P25259_1742.
contributor: Fredrik Ronquist
  type: Person
  affiliation: Swedish Museum of Natural History
contributor: Andreia Miraldo
  type: Person
  affiliation: Swedish Museum of Natural History
creative work status: completed
  type: DefinedTerm
  in defined term set: http://publications.europa.eu/resource/authority/dataset-status
  term code: COMPLETED
creator: Andreia Miraldo
  type: Person
  affiliation: Swedish Museum of Natural History
creator: John Sundh
creator: Elzbieta Iwaszkiewicz-Eggebrecht
creator: Emma Granqvist
creator: Lokeshwaran Manoharan
creator: Piotr Łukasik
creator: Ayco J. M. Tack
creator: Anders F. Andersson
creator: Tomas Roslin
creator: Fredrik Ronquist
  type: Person
  affiliation: Swedish Museum of Natural History
date modified: 2025-05-27
date published: 2024-11-07
language: English
keywords: Biological Sciences
  type: DefinedTerm
  term code: 106
keywords: Metadata
keywords: Observation
keywords: OCCURRENCE
license: https://creativecommons.org/licenses/by/4.0/
publisher: Swedish Museum of Natural History
version: 0

PropertyValue
property ID: DOI
value: 10.15468/783JYB

PropertyValue
property ID: UUID

Swedish Museum of Natural History
type: Organization

John Sundh
type: Person
affiliation: Stockholm University

Stockholm University
type: Organization

Elzbieta Iwaszkiewicz-Eggebrecht
type: Person
affiliation: Swedish Museum of Natural History

Emma Granqvist
type: Person
affiliation: Swedish Museum of Natural History

Lokeshwaran Manoharan
type: Person
affiliation: Lund University

Lund University
type: Organization

Piotr Łukasik
type: Person
affiliation: Jagiellonian University

Ayco J. M. Tack
type: Person
affiliation: Stockholm University

Anders F. Andersson
type: Person
affiliation: KTH Royal Institute of Technology

KTH Royal Institute of Technology
type: Organization

Tomas Roslin
type: Person
affiliation: Swedish University of Agricultural Sciences (SLU)

English
type: Language
alternate name: eng