Gene annotation of Linum trigynum
https://doi.org/10.17044/SCILIFELAB.24324382
The file contains the genes annotation of Linum trigynum genome.
The genome has been deposited to [ENA](https://www.ebi.ac.uk/ena/browser/homeÖppnas i en ny tabb) with the accession id: GCA_964030455 (project PRJEB67577).
The genes annotation has been done with [TSEBRA](https://github.com/Gaius-Augustus/TSEBRAÖppnas i en ny tabb). The genes contained in the S-locus region has been manually annotated using [StringTie](https://ccb.jhu.edu/software/stringtieÖppnas i en ny tabb) and [TransDecoder](https://github.com/TransDecoderÖppnas i en ny tabb). The conversion from gtf to gff3 has been done with [AGAT](https://agat.readthedocs.io/en/latest/index.htmlÖppnas i en ny tabb).
It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087Öppnas i en ny tabb
Gå till källa för data
Öppnas i en ny tabbhttps://doi.org/10.17044/SCILIFELAB.24324382
Citering och åtkomst
Citering och åtkomst
Skapare/primärforskare:
- Tanja Slotte - Science for Life Laboratory
- Juanita Gutierrez-Valencia
- Panagiotis-Ioannis Zervakis
- Zoé Postel
- Ignas Bunikis
- Lucile Soler
- Aleksandra Losvik
- Aurelie Desamore
- Sara Mehrabi
- Benjamin Laenen - Stockholm University
- Mohamed Abdelaziz
- Olga Vinnere Pettersson
- Juan Arroyo
Forskningshuvudman:
Citering:
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Ämnesområde och nyckelord
Ämnesområde och nyckelord
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