Bacterial and human proteomes dataset
https://doi.org/10.17044/SCILIFELAB.28359677
The dataset consists of a fasta file including 36 bacterial species and the human proteome obtained from the Uniprot database. The 36 bacterial species were chosen based on ≥ 1 % detection of total reads in 16S sequencing data of dried cervicovaginal fluid from paper cards. This dataset can be used as a reference file for quantification of bacterial proteins using maxquant.
The fasta file contains a representative proteome for the following species:
Proteome_ID
Species
UP000234775
Aerococcus christensenii
UP000016519
Alloscardovia omnicolens
UP000005984
Anaerococcus lactolyticus
UP000003191
Bifidobacterium breve
UP000003503
Dialister micraerophilus
UP000005947
Fannyhessea vaginae
UP000005392
Fusobacterium animalis
UP000002521
Fusobacterium nucleatum
UP000258888
Gardnerella vaginalis
UP000255264
Haemophilus pittmaniae
UP000004115
Lactobacillus iners
UP000003242
Megasphaera lornae
UP000002631
Mycoplasma hominis
UP000004206
Peptostreptococcus anaerobius
UP000002786
Prevotella bivia
UP000033103
Sneathia vaginalis
UP000000423
Ureaplasma parvum
UP000029628
Veillonella montpellierensis
UP000003744
Anaerococcus tetradius
UP000253807
Haemophilus parainfluenzae
UP000067598
Lactobacillus crispatus
UP000189488
Lactobacillus gasseri
UP000327236
Lactobacillus jensenii
UP000318911
Lactobacillus mulieris
UP000070160
Megasphaera hutchinsoni
UP000070531
Prevotella amnii
UP000254072
Prevotella disiens
UP001254699
Sneathia sanguinegens
UP000238573
Streptococcus anginosus
UP000008693
Bifidobacterium dentium
UP000005388
Streptococcus urinalis
UP000189488
Lactobacillus gasseri
UP000000821
Streptococcus agalactiae
UP000000625
Escherichia coli
UP000008816
Staphylococcus aureus
UP000000431
Chlamydia trachomatis
UP000005640
Homo sapiens
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Öppnas i en ny tabbhttps://doi.org/10.17044/SCILIFELAB.28359677
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Uppsala universitet