CO1 Amplicon Sequence Variants of bulk arthropod samples (mild lysis) collected with Malaise traps from the Insect Biome Atlas project in Madagascar
https://doi.org/10.15468/6U5RUM
Amplicon Sequence Variants of 418bp of CO1 from mild lysed arthropod community samples collected with Malaise traps from the Insect Biome Atlas project (https://www.insectbiomeatlas.orgÖppnas i en ny tabb) in Sweden, as described in the IBA data paper (https://doi.org/10.1038/s41597-025-05151-0Öppnas i en ny tabb) .
This dataset was published via the SBDI ASV portal (https://asv-portal.biodiversitydata.seÖppnas i en ny tabb) , and has been updated from 'Metadata only' to 'Occurrence' type.
Occurrence data were compiled from the following IBA Figshare items:
Processed ASV data from the Insect Biome Atlas Project v3: (https://figshare.scilifelab.se/articles/dataset/Processed_ASV_data_from_the_Insect_Biome_Atlas_Project/27202368/3Öppnas i en ny tabb)
- cleaned_noise_filtered_cluster_taxonomy_MG.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/50067522Öppnas i en ny tabb)
- spikeins_tax_MG.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/50067525Öppnas i en ny tabb)
Amplicon sequence variants from the Insect Biome Atlas project v6: (https://figshare.scilifelab.se/articles/dataset/Amplicon_sequence_variants_from_the_Insect_Biome_Atlas_project/25480681/6Öppnas i en ny tabb)
- CO1_asv_counts_MG.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/ 49727829Öppnas i en ny tabb)
- CO1_asv_seqs_MG.fasta.gz (https://figshare.scilifelab.se/ndownloader/files/46381135Öppnas i en ny tabb)
The following samples were excluded from this resource due to sequencing failure: P26762_1247, P26762_1333, P27359_1207, P27361_1307, P27361_1148; or lack of non-zero counts for annotated ASVs: P27359_2998, P27361_1125, P27360_1032.
Gå till källa för data
Öppnas i en ny tabbhttps://doi.org/10.15468/6U5RUM
Citering och åtkomst
Citering och åtkomst
Skapare/primärforskare:
- Andreia Miraldo - Swedish Museum of Natural History
- Fredrik Ronquist - Swedish Museum of Natural History
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