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CO1 Amplicon Sequence Variants of bulk arthropod samples (homogenized) collected with Malaise traps from the Insect Biome Atlas project in Sweden

https://doi.org/10.15468/AWJYCD

Amplicon Sequence Variants of 418bp of CO1 from homogenized arthropod community samples collected with Malaise traps from the Insect Biome Atlas project (https://www.insectbiomeatlas.org/Öppnas i en ny tabb) in Sweden, as described in the IBA data paper (https://doi.org/10.1101/2024.10.24.619818Öppnas i en ny tabb) . This dataset was published via the SBDI ASV portal (https://asv-portal.biodiversitydata.se/Öppnas i en ny tabb) , and has been updated from 'Metadata only' to 'Occurrence' type. Occurrence data were compiled from the following IBA Figshare items: Processed ASV data from the Insect Biome Atlas Project v3: (https://figshare.scilifelab.se/articles/dataset/Processed_ASV_data_from_the_Insect_Biome_Atlas_Project/27202368/3Öppnas i en ny tabb) - cleaned_noise_filtered_cluster_taxonomy_SE.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/50067528Öppnas i en ny tabb) - spikeins_tax_SE.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/50067531Öppnas i en ny tabb) Amplicon sequence variants from the Insect Biome Atlas project v6: (https://figshare.scilifelab.se/articles/dataset/Amplicon_sequence_variants_from_the_Insect_Biome_Atlas_project/25480681/6Öppnas i en ny tabb) - co1_asv_counts_se.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/46381132Öppnas i en ny tabb) - co1_asv_seqs_se.fasta.gz (https://figshare.scilifelab.se/ndownloader/files/46381138Öppnas i en ny tabb) The following samples were excluded from this resource due to low read counts: P28409_1377, P28409_1378, P28409_1379, P28409_1380, P28409_1382, P28409_1383, P28410_1334, P28410_1392; or lack of non-zero counts for annotated ASVs: P27361_1636, P28410_1037, P28410_1049.

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https://doi.org/10.15468/AWJYCD

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