Skip to main content
Researchdata.se

Phenotypic microarray data for three bacterial BCA that were exposed to six different wavelengths

https://doi.org/10.5878/gxa3-aa94
Phenotypic microarray data (PM 1 and PM 2) involving three bacterial strains, Bacillus amyloliquefaciens DSM7, Pseudomonas chlororaphis 58003, Streptomyces griseoviridis CBS904.68, under six light treatments (Darkness, 420, 460, 530, 630, 660 nm at 50 μmol per m2 per second) with six replicates for each. Each csv file is the raw data for one light treatment and all three bacteria. The output is in OmniLog values, which were measured as a colour change of tetrazolium blue due to respiration. Measurements for the dark treatment occurred every 15 min for 96 hours. For the other treatments manual measurements were taken every: 0, 6, 10, 24, 30, 48, 54, 72, and 96 h post inoculation (hpi). Measurements for the light treatments in the OmniLog incubator took one hour. For more information, please see the README file.
Download data and documentation (8 files / 17.32 MiB)

Data files

  • SLF_420_allhours_kinetic.csv
    815.24 KiB
  • SLF_450_allHours_kinetic.csv
    1.29 MiB
  • SLF_530_allHours_kinetic.csv
    1.29 MiB
  • SLF_620_allHours_kinetic.csv
    1.25 MiB
  • SLF_660_allHours_kinetic.csv
    1.29 MiB
  • SLF_Darkness_allHours_kinetic.csv
    9.03 MiB

Documentation files

  • ReadMe_dataset.txt
    2.8 KiB
  • The power of light Impact on the perfomance of biocontrol agents under minimal nutrient conditions.pdf
    2.37 MiB

Citation and access

Data access level:

Creator/Principal investigator(s):

Research principal:

Principal's reference number:

  • SLU.ltv.2024.4.4.IÄ-16

Data contains personal data:

No

Citation:

License:

Language:

Method and outcome

Unit of analysis:

Population:

Six replicates of three bacterial strains were exposed to different wavelengths for 96 hours. Readings were set to occur 0, 6, 10, 24, 30, 48, 54, 72, and 96 h post-inoculation (hpi). Output values were expressed in OmniLog units. The darkness treatment had readings every 15 minutes throughout the 96 hours.

Time method:

Sampling procedure:

Description of sampling:

Under dark conditions, the colour change was recorded automatically every 15 min, while under light exposure, the colour change of the PM panels was recorded according to previously established growth curves. Readings were set to occur 0, 6, 10, 24, 30, 48, 54, 72, and 96 hours post-inoculation (hpi). Output values were expressed in OmniLog units.

Number of individuals/objects:

108

Data format/data structure:

Data collection Experiment

Mode of collection:

Experiment

Description of the mode of collection:

Phenotypic microarrays (PM) were performed following procedures described by Gharaie et al. (2017) and Alsanius et al. (2021).

Data collector:

  • Swedish University of Agricultural Sciences

Source of the data:

  • Research data
  • Research data: Published

Instrument

Name:

Omnilog

Type:

Technical instrument(s)

Description of the instrument:

Machine used for microbial phenotypic characterization and identification.

Administrative information

Responsible department/unit:

Department of Biosystems and Technology

Contributor(s):

Funding

Funding agency:

Award number:

R-18-25-006

Award title:

Optimized integrated control in greenhouse systems sees the light

Topic and keywords

Standard för svensk indelning av forskningsämnen 2025:

Keywords:

Publications

Citation:

Karlsson, M. E., Hellström, M., Flöhr, A., Bergstrand, K.-J., & Alsanius, B. W. (2023). The power of light: Impact on the performance of biocontrol agents under minimal nutrient conditions. Frontiers in Microbiology, 14. https://doi.org/10.3389/fmicb.2023.1087639Opens in a new tab

Contact

Metadata

Version 1
doris
slu
Published:|Updated: