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Gene annotation of Linum trigynum

https://doi.org/10.17044/SCILIFELAB.24324382
The file contains the genes annotation of Linum trigynum genome. The genome has been deposited to [ENA](https://www.ebi.ac.uk/ena/browser/home) with the accession id: GCA_964030455 (project PRJEB67577). The genes annotation has been done with [TSEBRA](https://github.com/Gaius-Augustus/TSEBRA). The genes contained in the S-locus region has been manually annotated using [StringTie](https://ccb.jhu.edu/software/stringtie) and [TransDecoder](https://github.com/TransDecoder). The conversion from gtf to gff3 has been done with [AGAT](https://agat.readthedocs.io/en/latest/index.html). It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087
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https://doi.org/10.17044/SCILIFELAB.24324382

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Award number:

757451

Award title:

Supergene evolution in a classic plant system - bringing the study of distyly into the genomic era

Funding agency:

Award number:

2019-04452_VR

Award title:

The role of structural variation for the origin and evolution of a classic supergene

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References:

https://www.ebi.ac.uk/ena/browser/view/GCA_964030455

Is supplement to:

https://doi.org/10.1093/molbev/msae087

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scilifelab
su_en
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