Allel-specific read counts for sprat population samples used in "Limited parallelism in genetic adaptation to brackish water bodies in European sprat and Atlantic herring"
https://doi.org/10.17044/SCILIFELAB.25836238
"Sprat_DeDup_v2_HiC.fasta.gz" contians the draft genome used in the study, in FASTA format. It is the version upon the SNPs (single nucleotide polymorphisms) described have been called. "Sprat_pool_AD_DeDup_v2_PASS.txt.gz" contains tab-separated allele counts, as output using the "--counts" option in vcftools, from pool re-sequencting of the samples used in the study. Please see the corresponding supplementary information for sample codes etc. These counts underly the frequencies used throughout the study.
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Uppsala University