Allel-specific read counts for sprat population samples used in "Limited parallelism in genetic adaptation to brackish water bodies in European sprat and Atlantic herring"
https://doi.org/10.17044/SCILIFELAB.25836238
"Sprat_DeDup_v2_HiC.fasta.gz" contians the draft genome used in the study, in FASTA format. It is the version upon the SNPs (single nucleotide polymorphisms) described have been called.
"Sprat_pool_AD_DeDup_v2_PASS.txt.gz" contains tab-separated allele counts, as output using the "--counts" option in vcftools, from pool re-sequencting of the samples used in the study. Please see the corresponding supplementary information for sample codes etc. These counts underly the frequencies used throughout the study.
Go to data source
https://doi.org/10.17044/SCILIFELAB.25836238
Citation and access
Citation and access
Creator/Principal investigator(s):
- María Quintela
- François Besnier
- Qiaoling Deng
- Cecilie Kvamme
- Dorte Bekkevold - Technical University of Denmark
- Mai-Britt Mosbech
- Ignas Bunikis
- Roger Lille-Langøy
- Iole Leonori
Research principal:
Citation:
Administrative information
Administrative information
Funding
Funding
Funding agency:
- The Research Council of Norway
Opens a new window at ror.org.
ROR
Award number:
299554
Award title:
Strategic initiatives at the Institute of Marine Research
Funding agency:
- Swedish Research Council
Opens a new window at ror.org.
ROR
Award number:
2017-02907_VR
Award title:
The genetics of biodiversity
Topic and keywords
Topic and keywords
Swedish Standard Classification of Research Subjects 2025:
Keywords:
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Metadata
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