Exploration of immune phenotypes in self-sampling citizens
https://doi.org/10.17044/SCILIFELAB.28902911
This dataset contains levels of circulating antibodies and proteins measured in dried blood spot (DBS) samples. Study participants from the general population in Stockholm and Gothenburg (Sweden) self-sampled blood using sampling kits (Capitainer AB) during the spring of 2021.
- Levels of circulating antibodies were determined by multi-analyte serology using the Luminex platform. The data has been processed and normalised using a mixed model, followed by a Z-score transformation.
- Levels of circulating proteins were determined by proximity extension assays using the Olink Explore Inflammation panel from the Olink platform and NULISA-Seq using the 250-plex inflammation panel from Alamar Biosciences. The raw data has been processed using ProtPQN (https://doi.org/10.5281/zenodo.12731705Opens in a new tab) , followed by a Z-score transformation.
The files contain the following data and information:
- antigen_info.csv: Information about the antigens used in the serology assays.
- protein_data.csv: Proteomics measurements in wide format (each row a sample, each column a protein).
- protein_info.csv: Information about the proteins included in the proteomics assays.
- sample_info.csv: Information about the samples.
- serology_data.csv: Serological measurements in wide format.
- readme.txt: Additional details about the file contents.
Access to this data can be granted for non-commercial validation purposes and upon reasonable request to the provided contact. A reasonable request should contain the following:
- Name of PI and host organisation
- Contact details
- The scientific purpose of the data access request
- Commitment to inform when the data has been used in a publication
- Commitment not to host or share the data outside the requesting organisation
- Statement of non-commercial use of data
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Opens in a new tabhttps://doi.org/10.17044/SCILIFELAB.28902911
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Creator/Principal investigator(s):
- Annika Bendes
- Vincent Albrecht
- Hooman Aghelpasand
- Sofia Björkander
- Anja Mezger
- Max Käller
- Claudia Fredolini
- Olof Beck
- Erik Melén
- Niclas Roxhed
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