Linum grandiflorum haplotype 1 assembly and gene annotation
https://doi.org/10.17044/SCILIFELAB.31313980
This dataset contains the fasta file (Lgrand_hap1_v1.fasta.gz) and the gene annotation (Lgrand_hap1_v1_genes.gff.gz) of Linum grandiflorum haplotype 1 assembly.
The annotated assembly has been deposited in the European Nucleotide Archive, ENA (Project PRJEB87190) but it is missing the assembly accession (GCA_123456). Only the EMBL file is present.
The genome assembly is based on PacBio HiFi and Hi-C data using Hifiasm (https://github.com/chhylp123/hifiasmOpens in a new tab).
The gene annotation has been done with MAKER (https://www.yandell-lab.org/software/maker.htmlOpens in a new tab) and manually curated by NBIS.
This dataset is associated with this article: Zervakis, P. I., Postel, Z., Losvik, A., Fracassetti, M., Solér, L., Proux‐Wéra, E., ... & Slotte, T. (2025). Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution. New Phytologist, 247(6), 2964-2981.
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Opens in a new tabhttps://doi.org/10.17044/SCILIFELAB.31313980
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Citation and access
Creator/Principal investigator(s):
- Panagiotis Zervakis
- Tanja Slotte - Science for Life Laboratory
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Administrative information
Funding
Funding
Funding agency:
- European Research Council
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Funding agency:
- European Research Council
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Funding agency:
- Swedish Research Council
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Funding agency:
- Swedish Research Council
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Topic and keywords
Topic and keywords
Standard för svensk indelning av forskningsämnen 2025:
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