Linum grandiflorum primary assembly and gene annotation
https://doi.org/10.17044/SCILIFELAB.31362553
This dataset contains the fasta file (Lgrand_primary_v1.fasta.gz) and the gene annotation (Lgrand_primary_v1_genes.gff.gz) of Linum grandiflorum primary assembly.
The annotated assembly has been deposited in the European Nucleotide Archive, ENA (Project PRJEB87189) but it is incomplete, it contains only three contigs.
The genome assembly is based on PacBio HiFi and Hi-C data using Hifiasm (https://github.com/chhylp123/hifiasmOpens in a new tab).
The gene annotation has been done with MAKER (https://www.yandell-lab.org/software/maker.htmlOpens in a new tab) and manually curated by NBIS.
This dataset is associated with this article: Zervakis, P. I., Postel, Z., Losvik, A., Fracassetti, M., Solér, L., Proux‐Wéra, E., ... & Slotte, T. (2025). Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution. New Phytologist, 247(6), 2964-2981.
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Opens in a new tabhttps://doi.org/10.17044/SCILIFELAB.31362553
Citation and access
Citation and access
Creator/Principal investigator(s):
- Panagiotis Zervakis
- Tanja Slotte - Science for Life Laboratory
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Administrative information
Funding
Funding
Funding agency:
- European Research Council
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Funding agency:
- European Research Council
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Funding agency:
- Swedish Research Council
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Funding agency:
- Swedish Research Council
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Topic and keywords
Topic and keywords
Standard för svensk indelning av forskningsämnen 2025:
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