Data and code related to "Spatiotemporal kinetics of the SRP pathway in live E. coli cells", by Volkov et al.
https://doi.org/10.17044/SCILIFELAB.20502126
This item contains fluorescence microscopy data, simulated data, DNA sequence data, and analysis code related to the publication: Volkov et al., "Spatiotemporal kinetics of the SRP pathway in live E. coli cells".
The Signal recognition Particle (SRP) pathway is a universal mechanism for co-translational targeting of nascent polypeptides to the membrane bound translocation complexes, the translocons. By performing single-molecule tracking of dye-labelled SRP in living E. coli cells, we have been able to directly observe and measure the kinetics of this process. We further validated and refined our resulting reaction-diffusion model through simulated microscopy.
All raw microscopy data, simulated data, and processed data are included in the item, along with analysis code and code for figure generation.
Data has been acquired at the Dept. of Cell and Molecular Biology, Biomedical Center (BMC), Uppsala University. For technical details about data acquisition, please see the related publication Volkov et al. "Spatiotemporal kinetics of the SRP pathway in live E. coli cells".
A detailed list of files and file organization can be found in the readme text file.
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https://doi.org/10.17044/SCILIFELAB.20502126
Citation and access
Citation and access
Creator/Principal investigator(s):
- Ivan Volkov
- Erik Lundin
- Kalle Kipper
- Mikhail Metelev
- Spartak Zikrin
Research principal:
Citation:
Administrative information
Administrative information
Funding
Funding
Funding agency:
- European Research Council
Opens a new window at ror.org.
ROR
Award number:
947747
Award title:
Single-molecule tracking for live-cell protein synthesis kinetics
Funding agency:
- Swedish Research Council
Opens a new window at ror.org.
ROR
Award number:
2015-04111_VR
Award title:
Studies of protein synthesis in live cells - one molecule at a time
Funding agency:
- Swedish Research Council
Opens a new window at ror.org.
ROR
Award number:
2016-06213_VR
Award title:
The physics of genetic information processing
Funding agency:
- Swedish Research Council
Opens a new window at ror.org.
ROR
Award number:
2016-06264_VR
Award title:
An Integrated Environment for Ribosome Research
Funding agency:
- Swedish Research Council
Opens a new window at ror.org.
ROR
Award number:
2019-03714_VR
Award title:
Determinants for efficient synthesis, folding, and targeting of proteins in living cells
Topic and keywords
Topic and keywords
Swedish Standard Classification of Research Subjects 2025:
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Relations
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Metadata
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