CO1 Amplicon Sequence Variants of bulk arthropod samples (mild lysis) collected with Malaise traps from the Insect Biome Atlas project in Sweden
https://doi.org/10.15468/VEAHZB
Amplicon Sequence Variants of 418bp of CO1 from mild lysed arthropod community samples collected with Malaise traps from the Insect Biome Atlas project (https://www.insectbiomeatlas.orgOpens in a new tab) in Sweden, as described in the IBA data paper (https://doi.org/10.1038/s41597-025-05151-0Opens in a new tab) .
This dataset was published via the SBDI ASV portal (https://asv-portal.biodiversitydata.seOpens in a new tab) , and has been updated from 'Metadata only' to 'Occurrence' type.
Occurrence data were compiled from the following IBA Figshare items:
Processed ASV data from the Insect Biome Atlas Project v3: (https://figshare.scilifelab.se/articles/dataset/Processed_ASV_data_from_the_Insect_Biome_Atlas_Project/27202368/3Opens in a new tab)
- cleaned_noise_filtered_cluster_taxonomy_SE.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/50067528Opens in a new tab)
- spikeins_tax_SE.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/50067531Opens in a new tab)
Amplicon sequence variants from the Insect Biome Atlas project v6: (https://figshare.scilifelab.se/articles/dataset/Amplicon_sequence_variants_from_the_Insect_Biome_Atlas_project/25480681/6Opens in a new tab)
- co1_asv_counts_se.tsv.gz (https://figshare.scilifelab.se/ndownloader/files/46381132Opens in a new tab)
- co1_asv_seqs_se.fasta.gz (https://figshare.scilifelab.se/ndownloader/files/46381138Opens in a new tab)
The following samples were excluded from this resource due to sequencing failure: P23412_1633, P23412_1638, P23412_1641, P23412_1647; or lack of non-zero counts for annotated ASVs: P20863_1580, P23412_1318, P25061_1224, P25061_1440, P25061_1463, P25061_1711, P25061_1734, P25259_1134, P25259_1250.
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Swedish Museum of Natural History