Data for "Cellular Damage Triggers Mechano-Chemical Control of Cell Wall Dynamics and Patterned Cell Divisions in Plant Healing"
https://doi.org/10.5878/c1gs-8272
Confocal microscopy, electron microscopy and atomic force microscopy images of Arabidopsis thaliana roots, both in wild plants and mutant plants or plants under chemical treatment. The images show cell division phenotypes in pericycle cells, mainly stained with the specific cellulose dye calcofluor white.
These results are part of an investigation that seeks to dissect the molecular bases that regulate the regeneration response in Arabidopsis roots after mechanical damage.
Mechanical damage by herbivory or abiotic stress is common in nature in plants. Faced with this, plants have developed a rapid regeneration response that allows replacing damaged cells with new cells. In this study we demonstrate that the composition of the cell wall is important to optimize the regeneration response. Particularly, pectin plays a key role in cell-cell adhesion and cell proliferation after wounding.
The microscopy images are provided as TIFF files along with metadata tables. The atomic force microscopy data also includes force maps created in JPK NanoWizard.
Download data and documentation (6 files / 2.12 GiB)
Data files
Data files
- N+BDP and CWP-BDP in arabidopsis root.zip3.38 MiB
- Pericycle division after endodermis ablation.zip59.71 MiB
Documentation files
Documentation files
Citation and access
Citation and access
Data access level:
Creator/Principal investigator(s):
Research principal:
Principal's reference number:
- SLU.genfys.2025.4.2.IÄ-1
Data contains personal data:
No
Citation:
Language:
Method and outcome
Method and outcome
Time period(s) investigated:
Data format/data structure:
Species and taxons:
Data collection - Laboratory experiment
Data collection - Laboratory experiment
Mode of collection:
Laboratory experiment
Description of the mode of collection:
All data was collected in Umeå city
Most of the data correspond to confocal microscopy images of Arabidopsis roots. For this purpose, a Stellaris SP8 confocal microscope was used.
Electron microscopy images were acquired using a JEOL 1230 TEM, accelerating voltage 80 kV, with a Gatan MSC 600CW 2k x 2k CCD camera.
Cell wall stiffness measurements were made with NanoWizard 4 XP BioScience (ScanAsyst Air, Bruker, Inc.), which was mounted on an optical macroscope (MacroFluo, Leica). All quantitative measurements in lives root were performed with cantilever biosphere B20-CONT (nanotools)
Time period(s) for data collection:
2021-09-01 - 2024-03-31
Data collector:
- Umeå Plant Science Centre
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ROR
Source of the data:
- Research data
- Biological samples
Temporal resolution:
3 year
Spatial resolution:
0.00001 metres scale
Sample
Sample
Name:
Seedling of Arabidopsis thaliana
Description of sample:
Arabidopsis Seedlings were plated on half-strength (0.5) Murashige and Skoog (MS) medium (Duchefa) with 1% (w/v) sucrose and 0.8% (w/v) agar (pH 5.7). The seeds were stratified for 2 d at 4°C. Seedlings were grown on vertically oriented plates in growth chambers under a 16-h light/8-h dark photoperiod at 21°C.
Instrument
Instrument
Name:
Stellaris SP8 confocal microscope
Name:
JEOL 1230 TEM, accelerating voltage 80 kV, with a Gatan MSC 600CW 2k x 2k CCD camera.
Name:
NanoWizard 4 XP BioScience (ScanAsyst Air, Bruker, Inc.)
Administrative information
Administrative information
Responsible department/unit:
Department of Forest Genetics and Plant Physiology
Other research principals:
Identifiers
Identifiers
Umeå Plant Science Centre project number:
PMY330
Funding
Funding
Funding agency:
- Swedish Research Council
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ROR
Award number:
2019-05634_VR
Award title:
Electrical signals - The secret way of cell-to-cell communication
Funding information:
Plants, as sessile organisms are exposed to a variety of cellular damage caused by mechanical stresses, herbivore feeding, invading bacteria and nematodes. Parasitic nematodes represent a group of microscopic worms which induce plant cells damage that in turn, lead to a change in gene expression patterns and to the activation of a host defense response. Artificially to nematodes, laser ablation can cause similar damage and lead to the very same defense responses. This research proposal aims to identify important players controlling initial plant defense response generated by wounding. To identify genes involved in the initial plant defense responses, I will induce single cell and more progressed damage by laser ablation and nematodes. This will be done on wild type and ethylene signaling mutant roots of Arabidopsisfollowed by whole transcriptome shotgun sequence (RNA-seq). Next, I will characterize the role of identified proteins and their contribution to the wound mediated propagation of trio molecular events (electric signal, ROS, and Ca2+ production). To complete this approach, I will investigate how does the electrical signal together with ROS and Ca2+wave influence the intracellular organization and cell-wall integrity. Furthermore, I aim to investigate to what extent the wound-mediated electric signaling is evolutionary conserved. The proposed research will contribute to a new and exciting area to represent a milestone within plant research of defense responses.
Funding agency:
- Carl Trygger Foundation
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ROR
Award number:
CTS 20:277
Funding agency:
- Kempe Foundation
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ROR
Award number:
JCK-2011
Funding agency:
- Knut and Alice Wallenberg Foundation
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ROR
Award number:
KAW 2022.0029-Fate
Topic and keywords
Topic and keywords
Swedish Standard Classification of Research Subjects 2025:
Publications
Publications
Citation:
Di Fino, L. M., Anjam, M. S., Besten, M., Mentzelopoulou, A., Papadakis, V., Zahid, N., Baez, L. A., Trozzi, N., Majda, M., Ma, X., Hamann, T., Sprakel, J., Moschou, P. N., Smith, R. S., & Marhavý, P. (2025). Cellular damage triggers mechano-chemical control of cell wall dynamics and patterned cell divisions in plant healing. Developmental cell, S1534-5807(24)00771-8. Advance online publication. https://doi.org/10.1016/j.devcel.2024.12.032
